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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0338500 |
| Transcript ID | LotjaGi2g1v0338500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Vacuolar protein sorting-associated protein 25; TAIR: AT4G19003.1 E2F/DP family winged-helix DNA-binding domain-containing protein; Swiss-Prot: sp|Q8VZC9|VPS25_ARATH Vacuolar protein sorting-associated protein 25; TrEMBL-Plants: tr|I3SXY8|I3SXY8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0338500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:81544807..81548080) extracted from Lotus japonicus Gifu genome v1.2.
ATCAAACAAAATAAGAAGATTTTGCCTTATTTCCATTCACAAACAACTTACAAAATTACTGGTTTTAGAAACAAAACAGA ATTTGACCAGAGAAAGAAATATTTCTCGTTTATTTATTTCCTTAAATTTATTAATTTTGTTAAAACTATTGACCACGATA CTGAAAACACAGTGCCATATTATTCTGTGGTCTTCTTCCTCCATCATCGTTTTAGGGTTCGCAAAGTTTCAATCTCCCTT CACCATCAACGTTCCTGCAACTGATTCGAAGAAAACCGTTAATCTCTGTTCACAGCATTGAAGAAGCAAGATGCAGAAAT TGGGAGACTTCAAACTACCGCATTTCTTCAATTACCCACCTTACTTCACGTAAATCCCTTTCCACCCTTTTGTGAATTTT TCTTAATTCAATCTCAATCAAGCAGTGATCAACTGTTATGCCACTAGTTTTGCTGTCAAAATTGAATTTTGATAAATTCC ATTGAGTAATTCCCAATTTTTAACTATTATTAGGTTGCTTGTGATAGATACTGTTGTGTGATTCAATTTCCCCTCTTTTA TTTGCAAAATTCAATGCACATTGAGGAAGTAATTAGCTTGTAGTTGATTAGGCCTGTGACATTGGCTTCTACTTTTCAGT TTGCAGCCAGTAAGAGACACTAGAGAGAAGCAGATACAGCTTTGGAAAGAGCTTATTTTAGATTACTGCAAAACACAGAA GTTATTTGTAATTGGGCTTGAAGAAGAGTTTCCTCTGTTTACAAATCCTGTAATTGAAAGTAAGCTCAAACTTCCTGCTT TAGTGCCGGTTTTCGTGAAGACTTTTGAATTCACATAAACTCACTCACCTTTAGTTTTATGTCGCGTTTATTTCCGCCCT TTTGTCGAATGATGGTTTTCAGTTTTTTTGATAGTGCAGGGTCTCTTACTCATGAAGCCAGAGAAGCGTTTGTTTCAGCC TTAGTTTCAGAAGGTATGCTTCATGTCGTTGAATTTTTATAATTTTTTGTAATTGGGTCATAGTAGGATGCCTCAAGTGG GTTATTATGATTTGACAGGACGTGCAGAATGGATGGATAAAGGACATAGGAAATGTCTCGTTCTCTGGCATCGGATTCAA GATTGGGCTGAAATTTTATTACAGTTTGTACGTCTAGATTGCTAGTTTGATAACCACTTCATGCAAATATTTTTTTTTGG TCTTGTGATTGAATTTGCTTCAATCTTAATCAGGCGAAAGATAATGGACTCGAGGACAGTGTTGTGACAATAGAAGAAAT ACGCTTTGGGACTGAATCTCAAGGAACAGGTAATCTTTTAATGCTTGTAGGTTCTATTTAGCGTGTTATAATTTGGGATA GGACAACTTTAGCGATTTTTTCTGGTTCATTATAATTGTCTTATCATTTTTTCAGTGCTTGATGAGTTGACATTTTTAGG ACTAGATACTTAGTACTGGTTAGTTTTTCTAAAAATGCTATTACTTTTTAATATGTGTCCAACTAATCTGGTTGAATGAG ATTGTATATGTTATTTACTGTGTTTTAGGGATAGATGGAAATTTGAATAGATATGTTTCTTCACTTGTACTCAGACTCAG CTAAAGATAAGATGAAACGCACCATTGCAGAGAGCCAGTATGCCAAACTGATTTTAGGATATTAACTGTAGCGAAAAAAT CAGTAATCTGTCTTTTATCTTGTGATTCTAGTTGCTTTTGAAATAGTATTCATTATTTGAAGAAGTTGATGCCTTATTTA GGGAGATGAGAAAGTGTGCAAACAGTAGAACATATGTTATAAACTAAATTACTGACAGTTTTAAGAGCTTTACACTACTA TAAAAGCTGTTCAAATCACTCTGAAAGACCTGAGTTTCTACAATGGCAAGACAATGGATCAATTCCTACATCCCCACCAA ATTTAATTGTTTTACTCTCTATCACAAAGGAACAAATTTAAGTTCAATGTTAAAATATCCAACTCGGTTAACATTGGACT TCCTGTTTCATTTCGGGTGTCTGCATCAGGATAGAACATGTAACAATATAAGAAAAGTATGTCTCTTCATGAGAAGAGAG AATCAGATTTAATATATAGGAGCCGATTCGATGACATTTTTTGGATCATGGATGCTTATTGTTAAAATTATATGTTGCTA AGCTAATTTGCTCATTGACCCCCCCCCCATATTCATGACATGAGACTTTACTCACATCCTTCAGATCTGTCACTTGTAAT TGCCCATAGCCATATATAGCCTTTGACTTATTTCACATGCTTAGACAAATATTTGCAAGTTCATCAACTGTCCTTTTTAG GGCTCTTTTTATGATAACACAAAGTAGAGTTACATCCTATATTTTTTAAATATATACGGCAGATTTTCACGGGACTTTGC TACATTCCTTCTTCTTTTAAAGCGTACCGTCTCGTTTAGGACTTTGCAACTGTTTTGTCATTAGCTCTCATGAGTAATTT CTTTTTGATATATTGCAGAGCTTCATGGGATCGACCGAACTATTCTGAATCGGGCATTGAAACTATTAGAACAGAAGGGG AAGCTTGTGGTCTTTAAAGGAACTTCAACTGATGATGAAGGAGTTAAATTTTCTGTATGATGGTTGTGTGTGTTAATCTG TTGAATCTCGAGGGGCTTCAAATATGTAATCCTTGGAGGAAATCTTTTCCTGTCTCTTTGACTTGATTAGTTTGTTGACG GGAAAGGTATCTAAGATCAAGCTGATGTTACTTGCCATTGCCATCATTTTTTATTTTGGGATCTTGTGTAAGAATTCGGG TTTGTGGCCTTAATCTTTGTTGACTTAGAAACAATGTTCCCTGTGAAATAATGAAATTCGTACATGTGAGTCAGGGTTCC AAATTGTGATTTTATACATTGATATTATCAAATGCTTATCAAAAAAAAAAACATTGATATTATCAAAATAATGATGTCTG ATATGGTTGTATCAGTTGCAAAAGTTGTCTTAGTGCTAGTTTCTTTTTTTCTTTTTGGGTCAAATCTTAGTGCTCATTTT TTTCCAAGGGAAAATGGATTAATATCCAATATCTAAGCCATCTAATTTCATTCTGCCAGTTTCGCTAAGAACACTGCGAA GTCCTAGTCCACTGCACAGTGAAAGTTCCCAAGATCAAAGATGATTTCAGCTATAACATTAAAAGACTAGTTACTATACT TTGCATATTGCCTATGACCAGGGCGAAAAACTCCAATCCAAAAATTGCAATAATCACAAAAATTCTTTGGAGAT
CDS sequence (LotjaGi2g1v0338500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCAGAAATTGGGAGACTTCAAACTACCGCATTTCTTCAATTACCCACCTTACTTCACTTTGCAGCCAGTAAGAGACAC TAGAGAGAAGCAGATACAGCTTTGGAAAGAGCTTATTTTAGATTACTGCAAAACACAGAAGTTATTTGTAATTGGGCTTG AAGAAGAGTTTCCTCTGTTTACAAATCCTGTAATTGAAAGGTCTCTTACTCATGAAGCCAGAGAAGCGTTTGTTTCAGCC TTAGTTTCAGAAGGACGTGCAGAATGGATGGATAAAGGACATAGGAAATGTCTCGTTCTCTGGCATCGGATTCAAGATTG GGCTGAAATTTTATTACAGTTTGCGAAAGATAATGGACTCGAGGACAGTGTTGTGACAATAGAAGAAATACGCTTTGGGA CTGAATCTCAAGGAACAGAGCTTCATGGGATCGACCGAACTATTCTGAATCGGGCATTGAAACTATTAGAACAGAAGGGG AAGCTTGTGGTCTTTAAAGGAACTTCAACTGATGATGAAGGAGTTAAATTTTCTGTATGA
Protein sequence (LotjaGi2g1v0338500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MQKLGDFKLPHFFNYPPYFTLQPVRDTREKQIQLWKELILDYCKTQKLFVIGLEEEFPLFTNPVIERSLTHEAREAFVSA LVSEGRAEWMDKGHRKCLVLWHRIQDWAEILLQFAKDNGLEDSVVTIEEIRFGTESQGTELHGIDRTILNRALKLLEQKG KLVVFKGTSTDDEGVKFSV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 179 | 179 | 3.3E-92 | – | |
| PANTHER | 1 | 179 | 179 | 3.3E-92 | ||
| Gene3D | 4 | 99 | 96 | 1.3E-30 | ||
| SUPERFAMILY | 7 | 107 | 101 | 3.74E-31 | ||
| Pfam | 13 | 145 | 133 | 1.8E-41 | ||
| Gene3D | 100 | 178 | 79 | 3.8E-23 | ||
| SUPERFAMILY | 102 | 177 | 76 | 2.11E-16 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | ESCRT II complex | An endosomal sorting complex required for transport and functions downstream of ESCRT I complex. It consists of the class E vacuolar protein sorting (Vps) proteins and is required for the membrane recruitment of ESCRT III complex and binds to ubiquitinated cargoes. | ||
| Biological process | Multivesicular body sorting pathway | A vesicle-mediated transport process in which transmembrane proteins are ubiquitylated to facilitate their entry into luminal vesicles of multivesicular bodies (MVBs); upon subsequent fusion of MVBs with lysosomes or vacuoles, the cargo proteins are degraded. |
Expression pattern of LotjaGi2g1v0338500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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