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IPR019188 is a snRNA-activating protein complex subunit 1.
<p>Members of this family are part of the SNAPc complex required for the transcription of both RNA polymerase II and III small-nuclear RNA genes. They bind to the proximal sequence element (PSE), a non-TATA-box basal promoter element common to these 2 types of genes. Furthermore, they also recruit TBP and BRF2 to the U6 snRNA TATA box. SNAPc consists of at least four stably associated subunits, SNAP43, SNAP45, SNAP50, and SNAP190. None of the three small subunits can bind to the PSE on their own [[cite:PUB00045265]].</p>
This description is obtained from EB-eye REST.
| Transcript | Name | Description | Predicted domains | Domain count |
|---|---|---|---|---|
| – | Small nuclear RNA activating complex (SNAPc), subunit SNAP43 protein [Arabidopsis thaliana] gi|18409805|ref|NP_566983.1| | 7 | ||
| – | Small nuclear RNA activating complex (SNAPc), subunit SNAP43 protein [Arabidopsis thaliana] gi|18409805|ref|NP_566983.1| | 8 | ||
| – | Small nuclear RNA activating complex (SNAPc), subunit SNAP43 protein [Arabidopsis thaliana] gi|18409805|ref|NP_566983.1| | 7 | ||
| – | Small nuclear RNA activating complex (SNAPc), subunit SNAP43; TAIR: AT3G53270.1 Small nuclear RNA activating complex (SNAPc), subunit SNAP43 protein; Swiss-Prot: sp|Q8K0S9|SNPC1_MOUSE snRNA-activating protein complex subunit 1; TrEMBL-Plants: tr|A0A0S3R728|A0A0S3R728_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0328400 | 9 | ||
| – | Small nuclear RNA activating complex (SNAPc), subunit SNAP43; TAIR: AT3G53270.1 Small nuclear RNA activating complex (SNAPc), subunit SNAP43 protein; Swiss-Prot: sp|Q8K0S9|SNPC1_MOUSE snRNA-activating protein complex subunit 1; TrEMBL-Plants: tr|A0A1J7I3A2|A0A1J7I3A2_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0328700 | 9 | ||
| – | Small nuclear RNA activating complex (SNAPc), subunit SNAP43; TAIR: AT3G53270.1 Small nuclear RNA activating complex (SNAPc), subunit SNAP43 protein; Swiss-Prot: sp|Q8K0S9|SNPC1_MOUSE snRNA-activating protein complex subunit 1; TrEMBL-Plants: tr|A0A1J7I3A2|A0A1J7I3A2_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0328700 | 9 | ||
| – | Small nuclear RNA activating complex (SNAPc), subunit SNAP43; TAIR: AT3G53270.1 Small nuclear RNA activating complex (SNAPc), subunit SNAP43 protein; Swiss-Prot: sp|Q8K0S9|SNPC1_MOUSE snRNA-activating protein complex subunit 1; TrEMBL-Plants: tr|A0A1J7I3A2|A0A1J7I3A2_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0328700 | 9 | ||
| – | Small nuclear RNA activating complex (SNAPc), subunit SNAP43; TAIR: AT3G53270.1 Small nuclear RNA activating complex (SNAPc), subunit SNAP43 protein; Swiss-Prot: sp|Q8K0S9|SNPC1_MOUSE snRNA-activating protein complex subunit 1; TrEMBL-Plants: tr|A0A1J7I3A2|A0A1J7I3A2_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0328700 | 9 | ||
| – | Small nuclear RNA activating complex (SNAPc), subunit SNAP43; TAIR: AT3G53270.1 Small nuclear RNA activating complex (SNAPc), subunit SNAP43 protein; Swiss-Prot: sp|Q8K0S9|SNPC1_MOUSE snRNA-activating protein complex subunit 1; TrEMBL-Plants: tr|V7CCG6|V7CCG6_PHAVU Uncharacterized protein; Found in the gene: LotjaGi4g1v0275100 | 8 |
A list of co-occurring predicted domains within the L. japonicus gene space:
| Predicted domain | Source | Observations | Saturation (%) |
|---|---|---|---|
| TRANSMEMBRANE | Phobius | 1 | 11.11 |