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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0328700 |
| Transcript ID | LotjaGi3g1v0328700.4 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Small nuclear RNA activating complex (SNAPc), subunit SNAP43; TAIR: AT3G53270.1 Small nuclear RNA activating complex (SNAPc), subunit SNAP43 protein; Swiss-Prot: sp|Q8K0S9|SNPC1_MOUSE snRNA-activating protein complex subunit 1; TrEMBL-Plants: tr|A0A1J7I3A2|A0A1J7I3A2_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0328700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:69611845..69616490) extracted from Lotus japonicus Gifu genome v1.2.
ACTCAAGCAAGGTTATTATTATATTTAGCGGTGGGTGTTATCAGTGTTAGTCATCTCGCGGCGGTTTATAGCTTTAGTTG ATAAATGGAACTGGAAAATTATACAAAGGACAAAAAGCATCTACACTCGGGGCTGTGTTTGATTTTCAGTTTGGAAGCTT TGAGTTTCTGTTGGGTGAAAGTATTTTCAAACTGAAAACCAAACAAACGGTGAATCCTTCTCTCTCACGTTCGCTTCCAT TGTTCACCTTGCCTTCGTTCATCTTGCCTCTGCGAACTAACGTTTACCTTGGCACGAACCATAGTTATCCATTACTGCAA AGGTATTAATTCTTTCTTGTACTCTGATTTCATACTTTTTATTTAGATTAGGGTTTATACTGCTGATCGGTCAGATTCTG AGCCTTGATGAACTTATTGGTGAATTCGCTCAGGTATTTCTATCACCACTACTTTCCTCATTGTGTTGGTTCATTTGTAA AGCTTGTTTCTAGATGTGGGCACCAAGAGTAACTGGTAAACTGGTTGTTTTTTAGCGTTGCGGTGAAGAGGCTTCATTTT ACTTAGAAACATTGCTATTGATCATGTTTGTCATGTTCTCCAATTATCAGTGTAATGATGTATCATGTTTCATGACAACT GCAAAGGTGGATGGCGTAGCGGTAGCGGAGATTGTTCCCGGTGGAGGAGATGACGAACTCGCGACAAGATGGAGCTGCAT ATTGGTTCTATTGGGTTTGTATATGAATGTTGGAGTGATGGATTGTAATACTGGATTAAAACCAAGATGGAGTACGATGT GGATTAAAGAATAGTGTGGTTGAGCAGGATGACAGAGAGATGATAGTTTGTTTTGGACGTGAAAGCTATTATCCACATGT TATATGATAATTTGGGAACAAACATGAACAAGAGCGTAGCCCTGTTTCTAAGGTTTGTCCGTACATTATATATATGATAT GATTTATTCTATTGTCTCTGATAACATGTAACTCTGTTGATACCTGGACATTTAGCGTGAATTTAAATATCAGCTTATAC AATAATGCAAACAACCATACAGATAAAACAATGATTTGGTACAAAAAACCACAAACTATTCATCTGAACTTATTTGTTTG TTTTGTGATAGGTAGGCAATAAAATGTCCCTGATCAATTGGTTGCATATACAACAGCAACAATCAAAACCTTTTTTCACT AGATGGGGACAATAATGTCTATTGATCAGTTTCAAATGTTAAAAGTACAAGTCCCTACTGTCTCTGTACTAAGAAGAAAA AGGAAAAACCCAAACGCGGCGCAAAAGTCACTGCCTCCAAAGTAAAAAGCATGTTGTAACCTGGCTGTGTTAGTAACTAT TAGGTTATATTCTACTATAACAATAAAAAAACTATTAACAAAATTTATTGGGAGTTAAAAACTCACTCAGAAGATTAACA TTTGTGTTTATAATCTTTAAGCACAAAATGAATGCTTGTTAAGGCGGGACGCTAATCAGATCATTCCCCTTTAAACCCTC TAAATAGGCAGAAAATAAGAATATTACTGAGTACAGTATTCTGTGATAGTTTGTACTTCAAAGTTCAAACATGACATTCA AAAGGACTATGTAATTTCATTCTTTGACCGCCATTCTCATAATGCTTTTGTGGGTTGGCTGAACCATTGTTCAGAAAATT CTGAGTCAGTAATAACAGATCCTTCTTAGTTGTTAATAAATTACTGATAAGAAGATCCCTATTTGTTTCTTATTATTTGT ATTTGGTTAGTAACAATCAATACTTACTGTTCAACTTTGGTGAGTGACAGGATGAGTCAACAACTCTAGCTGATATGAAG AGAGTATGGCTTTCTAAGAAGTTTTCCTACATTTATGAAGCTTATCCTTCCACCAACCTGGCCTTCTTTATGCAATCTCT GTATGCTCATTGTATAGGTACATCTTTAGCTGGTATATGCGGTGTTGATCTTACTTATTTTTATATCTAAAACTGGTAAA TGCAAACTATTCACTTGAGTTCAGGATTTTAGTGGTAATTTGGATGTTGAATGGTTTTATTTTGATGCTGAAAAATATTT CCAAAAGTAAAAGGCAGTGAAACAAACAGAACTGAAATTCACAATATATTTGTGACAATTCACAAGTATTTGATAATTAT GTCATTTTAAGTGTATTAGTTTTACTTTATTAGCCTTTATCTTTTTATTTCATTATAGAAACTCCTTTATGTTCCTTGTA ATGTTCCTATGCAGGTTACATGGTTGGTGCTGGTTCTTTATCAGTCAGACTGGGCAGCCTTTATTGCCTCTACTGTCTTT ATGAGACTCAACCTTTTAAACCTCCTTTTAAGATCTATCTATCCCTTGGTATGACAAATTTTCACTTGAAAATAAACTAT CATACTATTATCTCACTTGATAGAGTTTGTATTCTGATATGATTCGAGCCCCAATTAAAAGGGTCTTTGAGAGGAAATGT AAGAGGAATGTACGGGAAAATAACCCTGCACCCTCAAAGCTGAATTTAGTTATTAGTTGTAACTGATTTGTTAATTGTAA CAGAATACTATCTTAGCTGTCATAGTTAGTTAGGATCACTGTTAGCATGGAAATGGAAACCCCGGTACTATAAACAGGAA ATGGAAAATAGAGAAAAGTAAGAAATTGGTGGAAAGTAGTGGAGAGGTCTGGATTTCTCAAAGGGGGGGGGGTATTCTTT TCCTCTGGAAATTTGAGAGTTTACTCAATGAAGTTCTTCGTCCAGTTCTTCTAAACCTCTCGTAGGCAATTCTTATCATA TTGTCACAGAGGCACATTGTTTGTACACACTTTAGGGATTGCGTCATTTTCTGTAACTTCTAAACTGCTTATATAATTTT GCTTGTCGGAGCGAGATATATCATTCGACTTATTCGTAATGTATATTAATTACACATGATGGTTTAATGTAACTTCCTTT TTTAATTACACATTCCCCCAGTTTACATGAAAAACCTAAATTTATGTTTGTACAGGAGAGTTAAAGAAAGTCAGGATCCT TGTTGCTGATGCAAAAGTAAATGCCATTAACGTGGCACCTGCTGTAGTAAACAGAATGCTGGAAAGAAACATGTTCCTTT TTGGCGCTGTTGACTTAGCGGAAGGTGCTGTCACAGAGACAGTACAGCAACTCCAACAATTGCAGAATGCCAGTATTCGA GTGGCATATGAAACGTAAACCACCATGCTTGAAAGAAACATGTTCCTTTATGTTCAATACGCTTTTTTCCTTGTGATGTT GTCATGATAGTTTAGTTAACCTTACAATTAAATGTTTTAATCTATTCCCTGCGGATGACAGGTTATTTAAAAGCACTCCA ATCAATCACTACATCCACATGGACCTTGTAAGTTTCCCAGTGCTTTATGACTTGCATATTGATTTCATTCTTTAATCACA CTGATTTGCCATCAGATTTCAAGTTTGCCAGAAGCTTATATTGTTATTTATTTTCATCTAGTGTGTTAGATGGGTTGGAC TTTGGAGTCATTTACAAGGGCTGATGCAATTAACTTAGTTTTAGGGAACTAGGACGAAAACGGTGGATAGCTAAAGTGTG TAATTTTTTTTAAAGAATAAAAAAGCTCTTGTGGCGTGTTACTTAACTTAATAATTGCAGCTATCATATAACCTTCATTT CCAGGGCGATGGGGTTTCTTTGGGGGGGCTAATTGAACTTGGTGCAGTTAGGTACATGATTTTAGCATACTTGCTGGCCT GATTGAAATTTGAAGGATTGGCTATAAGACTAAGATCCATGCAATTTCAGCCGATGTATATGGCTTTATATTGCATAGGT TAGAAAGCTGATTTAATTATAATAAAAATTTGTGAAGAAAACTTGTGCAGGGCATGCCACTCAATCGATGCTTTCATGTT TCATGTGGGCCTGGGTGGATTTTGACATCTATCTCTTAGAAACTAATCAATCTGTTGAGAGATGTATTTCACGCAATCTC ATTCTATAGATTGCCTGTTTCTTTAGTTTGTGATTTAATTGCATTTAACTTCCTTACTCCTTTGCACTTGTTAGGGCATG GAAGTAGACCTCAATAATCTGAAGAAAATATCATCTGAATATGCTGAGGCCAAGCATGTAGCCGCGAAAGGTAATTATTC GATTCCTCTTATAAATCATAAGGTGCTCGGTGATTAAGACATTTTCTCTATTTTGAATTGATTTCTTGTTGTGTAACCTT GTATATGTGCATTGTCTTTGTTTCTTCTTGAAGAAGCAAGCAGTATTTTAGACGCCGAAAATATAAAGCGCATAGCAGGA AATAAGGAATTGATGCTAGGAGATGTCTTTGAGGAGATTGCTAATGATTGGGTTATCCAGAAACAAGCATTTTATAAACA AACAGGATTAGAGGAGGATGAAGCATATGAACAAGAGCTGGAGCAGTTACTTCTAGAGCACCGTCATGATGATGAAGAGT CTAATGAAGATTGAAAACAAACATATGAGTCGTAGTTTCTTATGTATAGGGTATCCATAATGCTAATAGCCTTGTTTGAA TAGTAGATTAGTTGGGAATTTCAAAGAAGCTGTGAACTTTTTTTGCGGGGTCGGGGGGCATTTAAGATCCTTTATGAAAC AGAACA
CDS sequence (LotjaGi3g1v0328700.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGAGAGTATGGCTTTCTAAGAAGTTTTCCTACATTTATGAAGCTTATCCTTCCACCAACCTGGCCTTCTTTATGCA ATCTCTGTATGCTCATTGTATAGGTTACATGGTTGGTGCTGGTTCTTTATCAGTCAGACTGGGCAGCCTTTATTGCCTCT ACTGTCTTTATGAGACTCAACCTTTTAAACCTCCTTTTAAGATCTATCTATCCCTTGGAGAGTTAAAGAAAGTCAGGATC CTTGTTGCTGATGCAAAAGTAAATGCCATTAACGTGGCACCTGCTGTAGTAAACAGAATGCTGGAAAGAAACATGTTCCT TTTTGGCGCTGTTGACTTAGCGGAAGGTGCTGTCACAGAGACAGTACAGCAACTCCAACAATTGCAGAATGCCAGTATTC GAGTGGCATATGAAACGTTATTTAAAAGCACTCCAATCAATCACTACATCCACATGGACCTTGGCATGGAAGTAGACCTC AATAATCTGAAGAAAATATCATCTGAATATGCTGAGGCCAAGCATGTAGCCGCGAAAGAAGCAAGCAGTATTTTAGACGC CGAAAATATAAAGCGCATAGCAGGAAATAAGGAATTGATGCTAGGAGATGTCTTTGAGGAGATTGCTAATGATTGGGTTA TCCAGAAACAAGCATTTTATAAACAAACAGGATTAGAGGAGGATGAAGCATATGAACAAGAGCTGGAGCAGTTACTTCTA GAGCACCGTCATGATGATGAAGAGTCTAATGAAGATTGA
Protein sequence (LotjaGi3g1v0328700.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKRVWLSKKFSYIYEAYPSTNLAFFMQSLYAHCIGYMVGAGSLSVRLGSLYCLYCLYETQPFKPPFKIYLSLGELKKVRI LVADAKVNAINVAPAVVNRMLERNMFLFGAVDLAEGAVTETVQQLQQLQNASIRVAYETLFKSTPINHYIHMDLGMEVDL NNLKKISSEYAEAKHVAAKEASSILDAENIKRIAGNKELMLGDVFEEIANDWVIQKQAFYKQTGLEEDEAYEQELEQLLL EHRHDDEESNED
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 230 | 230 | 1.3E-72 | ||
| Pfam | 1 | 174 | 174 | 1.4E-40 | ||
| PANTHER | 1 | 230 | 230 | 1.3E-72 | – | |
| Phobius | 1 | 11 | 11 | - | – | |
| Phobius | 12 | 30 | 19 | - | – | |
| TMHMM | 21 | 43 | 23 | - | – | |
| Phobius | 31 | 35 | 5 | - | – | |
| Phobius | 36 | 57 | 22 | - | – | |
| Phobius | 58 | 252 | 195 | - | – | |
| Coils | 111 | 131 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0328700.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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