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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0275100 |
| Transcript ID | LotjaGi4g1v0275100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Small nuclear RNA activating complex (SNAPc), subunit SNAP43; TAIR: AT3G53270.1 Small nuclear RNA activating complex (SNAPc), subunit SNAP43 protein; Swiss-Prot: sp|Q8K0S9|SNPC1_MOUSE snRNA-activating protein complex subunit 1; TrEMBL-Plants: tr|V7CCG6|V7CCG6_PHAVU Uncharacterized protein; Found in the gene: LotjaGi4g1v0275100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:64536459..64541176) extracted from Lotus japonicus Gifu genome v1.2.
CTACTATGAGCGCACTAAGCGGTAGGTGGCCAAGGAGTTAAACATATATTGATTTTTGTTTAATACAATTTTTTATTTGG GTAAAATACTACCCCTCAAGGTTTACAAAAAAAAACACTTAAATGTCCCAAAACCCCAACTTGCACTACTCTTGAATGCT TCCATTCGCAAATTGTGCCTCTACTCTGATAGATTTGGAACCGTTTTCTCCGATGGCATCTTCTTCCCCCCACTTCATCT GAATCCTCTGCGCCATCAACGACTTTCTTAAGCTGCTTCTTCACCATGAATATTGATTATTTCAAGAAGGACATTGATGA ACTTATTGGTCAATTCGCTCAGGTATTTCTTTCTATCACCACTACTTTCCACATTGTGTTGCTTCGTTTTGTAAACTCTG TTGATACTTGGACATTTAGCATGAATTTAAATATCAGCTTATATAATGCTAAAACCCATACAGATAAAACAATGTTTTGG TACAGAAAACCACAAACTATTCATCTGACTTTATTGGTTTGTTTTGTGATAGATACATAATTAAATGTCCCTAATCAATT GTTTGCATATACAACAGCAACAATCAAAGCCTTTTTTTCACTAGATGGGGTCAATTATGTGAATCATATGATGTTATGAT GTCTATTGATCAGTTTCAAATGTTAAAAGTACAAGTCCCTCTCCATCTCTGAACTAAAAGGAAAAACACAAACGCGGCGC AAAAGTCAGTGCCTCCAAAGTAAAAGCATGTTGTAACCCGGTTGTGTTAGTAACTTAGGTTTTATTCATTGGAAGTTAAA AACTAAGTCAGAAGATTAACATTTGTGTTCATAATCTTTAAGTACAAAATGAATGCTTGTTCAGGCCGAGACGCTAACCA GATCATTACCCTTTAAAGTTTAAACCCTCTAAGTAAGCACAATATAAGATTATTACTGAGTAAAGTATTCTGTGATAGTT TGTACTTCAAACATGACATTCAAAAGGACTAAAGGAGTATGGAATTACATTCTTTGACCGCCATTCTCATTATGCTTTTG TGGATCGGCTGAACCATTGTTCAGAAAATTCAGAGTCAGTAATAACAGACTCTTGTTAGTTGTTAATAAATTACTGATAA GAAGATCCCTACTTGTTTCTTATTATTTGTATTTGGTTATTAAAACTCAATACTTACTGTTCAACTTTGGTGAGTGACAG GATGAGTCAACAACTCTGGCTGATATGAAGAGAGTATGGCTTTCTAAGAAGTTTTCCTATATTTATGAAGCTTTTCCTTC TACCAACCTGGCCTTCTTTATGCAATCTCTGTATGCTCATAGTATAGGTACATCTTTAGCTGGTATATGCAGTGGTAATC TTACTTATTTTTATATCTAAAACTGGTAAATGCAAACTATTTACTTGAGTTCAGGATTTTTCTGGTAATTTGGATGTTGA TGGTTTTGTTTTGATGCTGAAAAATATTTCCAAAAGTAAAGGCAGTGAAGCAAACAGAATTGAAATTCATAATAAATTTG TGACAATTCACCAGTATTTCATAATTATGCCATTTTAAGTATAATAGTTTTACTTTATTAGCCTTTATCTTTTTTATTTC ATTATAGAAACTCCTCTATGTTCCTTTTGATGTTCCTATGCAGGTTACATGGTTGGTGCCGGTTCTTTATCAGTCCGACT GGGCGGCCTTTATTGCCTCTACTGTCTTTATGAGACTCAACCTTTTAAACCTCCTTTTAAGATCTATCTATCCCTTGGTA TGATAAATTTTCACTTGAAAATTAACTATTATACTATTAACTAATTTGATAAAGTTTGTATTCTGATAAGATTCGATCCC CAATTAAAAGGGTCTATGAGAGGCAATGTGAGAGGAATGCAGGGGAAAATAACCCTGCACCCTCAACGTGAATAGGAGAG TTAGCTATTAGTTGTAACTGATTTGTTAATTATAACAGAATACTATCTTAGCTTTCATAGGTTGTTAGTATCACTGTTAG CATGGAAATAACTACCCCGGTGCTATAAACAGGAAAGGGAAAATAGAGAAAGGTAATAAATTGGTGGAAAGCAGTGGAGA GGACTGGATTTCTCAAGGGGGGGGGGGGTCTTCTTTTCCTCTGGAAATCAGAGAGTTTACTCAATAAAGTTTTTCTTAGT CCAGTTCTTCTTATAAACCTATCGTAGGCAACTCTTATCATATTGTCATAGACTCACTTTGTTTGTGCACAATTTAGGGA GTGCGTCATTTTCCGTAGCTTCTAAACTGCTGATATAATTTTGCTTGTTGGAGCGAGAGATATCATTTGACTTAATCATA ATTCCTTTAATTTTAGTTTTATGTTGATTTATAGGTCTGCGTTTACATATTTAAACCTATCGTTAGGATGTTGCTTATGC ATCTTTATTTACTTCCTTCAAAGGGAAATATTCTGTTCATCATACATAATCCAGCCCTTGTTATGTAAAGGCTTCTTAGG TGTGTGCTGATACTAACTAAAGTGGGTGTTTGATGAAGTTATATATTGTTCAAACATCTTCATTGTTATTGTTATTGTTT GACTCTGCACATTTACATGATAGGAAGATACTGGTTTTTTTATGATAGCTGCTAATGTGTGATTGAGGAAAAGTTTATCT TTCTTAATATGATGTGCAGTATCCCTCATGGGTCATAGTGTCAGCAGAGTAGTCTGTTACTGTAACAGTCCTTTTTTTAT TACACATTCCCCCAGTTTTAATGCTATATTTTGTTTCTTATTTGTCCAAATGATGGTTGACATGAAAATGCTAAATTTAT GTTTGTACAGGAGAGTTAAAGAAAGTCAGGATCCTTGTTGCTGATGCAAAAGCAAATGCCATTAACGTGGCACCTGCTGT AGTAAACAGAATGCTGGAAAGAAACATGTTCCTTTTTGGCGCTGTTGATTTAGCGGAAGGTGCTGTTACAGAGACAGTAC AGCAACTCCAACAATTGCAGAATGCCAGTATTCGAGTTGCATATGAAACGTAAACCACCATGCTAGAAAGAAACATATTC CTTTATGTTCAATACTCTTTTTTCCTTGTGATGTTGTCATGATAGTTTAGTTAACCTAACAACTTAATGTTTTAATCTAT TCCCTGCGGATGACAGGTTATTTAAAAACACTCCAATCAATGACTACATCCACATGGACCTTGTAAGTTTGCCAGTGCTT TATGACTTGCATATTGATTTCATTCTTTAATCACACTGATTTGCCATCAGATTTCATAAGTTTTCCAGAAGCTTATATTG TTATTTATTTTCATCTAGCATGTCAGATGGATTGGACTTTGGAATCATTCACAAGGGCTGATGCAATTAGCTTAGTTTTA GGGAACTAGGATGAAAACAGTTGACAGCTAAAGTATGTAATTTTTTATTAAGAATAAAAAAGCTCTTGCGGCGTGTTACT TAACTTTATATTTGTAGCTATCATATAACCATTTTCAGGGTGATGGGGTTTCTTTGGGGCTAATTGAACTTGGTGCAGTT AGGTACATGATTTTAGCATACTGGCCTGATAGAAATTTGAAGGATTGGCCATAAGATCCGTGCAATTTCATCCGATGTAG TTGGCTTTATATTGCATAGGTCAGAAAGCTGATTCACTTCTAATCAAAATTTGTGAAGAAAACTTGTGCAGGGCGTGCTA CTCACGCCATCTCATTCTATAGGTTGCCTTTTCATTTTTTAGTTTGTAATTTAATTGCATTTAACTTCCTTTCTCCTATG CACTTGTTAGGGCATGGAAGTAGACCTCAATAATCTGAAGAAAATATCATCTGAATATGCTGAGGCCAAGCATCTAGCTG CAAAAGGTAATCATTCCTTTCCTCTTGTACATCATAAGGTGCTTGCTGTGTAACCTAGTGTTTGTTTTTTCCCTGTCATC CTATAAAAGGTCAACACAGGCAACCTTAAGATACACTTTTGATATACATGTATATCAGTATATGTGTGTGTGTGTGTGTA TATATATACATATATTGTTTGCTTGCTGACTAAAGTGCACATATGGGAGCTTATCTACTAAAAAAAAGGCACTAAATAAG CTCCAACTAGTGTTCTTAGTTTGGAACGCTTGAGTGTTTACGTTGGGGGTTGCTTTGGATATTCTATCTGGTGTTGCAAT GTCTGGTGCATGGTACATTGATTTTGTCAATTATCTAATTTCTATGCATGTGCATTGTCTTGGTTTCCTCTTAAAGAAGC AAGCAGTATTTTAGACGCCGAAAATATAAAGCGCATAGCAGGAAATAAGGAATTGATGCTAGGAGATGTCTTTGAGGAGA TTGCTAATGATTGGGTTATCCAGAAACAAGCATTTTATAAACAAACAGGATTAGGGGAGGAGGTAGCATATGAACAAGAG CTGGAGCAGTTACTTCTAGAGGACCGTCATGATGGTGAAGAGTCTAATGAAGATTGAAAACAAACATCTGAGTCGTGGTT TCTTATGTATAGGGAATTCATAATACTAATACCCTGTTTGAATAGTAGGGAATTTCAAAGAAGCTGTGTACTTTTTTTTT GGGGGTGGATTTTAAATCCTTTATGTAACATGTCTTGTTTGAATTCGTAATGGAATAGAATCAAATTAATTGTTATTATA GTATTTATTTATATTGTTTGAAGATAAAATAAAAAAGGAGAATGAACTTGTTAAACCTGTCACCGTCAGGTAAAGATA
CDS sequence (LotjaGi4g1v0275100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAATATTGATTATTTCAAGAAGGACATTGATGAACTTATTGGTCAATTCGCTCAGGATGAGTCAACAACTCTGGCTGA TATGAAGAGAGTATGGCTTTCTAAGAAGTTTTCCTATATTTATGAAGCTTTTCCTTCTACCAACCTGGCCTTCTTTATGC AATCTCTGTATGCTCATAGTATAGGTTACATGGTTGGTGCCGGTTCTTTATCAGTCCGACTGGGCGGCCTTTATTGCCTC TACTGTCTTTATGAGACTCAACCTTTTAAACCTCCTTTTAAGATCTATCTATCCCTTGGAGAGTTAAAGAAAGTCAGGAT CCTTGTTGCTGATGCAAAAGCAAATGCCATTAACGTGGCACCTGCTGTAGTAAACAGAATGCTGGAAAGAAACATGTTCC TTTTTGGCGCTGTTGATTTAGCGGAAGGTGCTGTTACAGAGACAGTACAGCAACTCCAACAATTGCAGAATGCCAGTATT CGAGTTGCATATGAAACGTTATTTAAAAACACTCCAATCAATGACTACATCCACATGGACCTTGGCATGGAAGTAGACCT CAATAATCTGAAGAAAATATCATCTGAATATGCTGAGGCCAAGCATCTAGCTGCAAAAGAAGCAAGCAGTATTTTAGACG CCGAAAATATAAAGCGCATAGCAGGAAATAAGGAATTGATGCTAGGAGATGTCTTTGAGGAGATTGCTAATGATTGGGTT ATCCAGAAACAAGCATTTTATAAACAAACAGGATTAGGGGAGGAGGTAGCATATGAACAAGAGCTGGAGCAGTTACTTCT AGAGGACCGTCATGATGGTGAAGAGTCTAATGAAGATTGA
Protein sequence (LotjaGi4g1v0275100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNIDYFKKDIDELIGQFAQDESTTLADMKRVWLSKKFSYIYEAFPSTNLAFFMQSLYAHSIGYMVGAGSLSVRLGGLYCL YCLYETQPFKPPFKIYLSLGELKKVRILVADAKANAINVAPAVVNRMLERNMFLFGAVDLAEGAVTETVQQLQQLQNASI RVAYETLFKNTPINDYIHMDLGMEVDLNNLKKISSEYAEAKHLAAKEASSILDAENIKRIAGNKELMLGDVFEEIANDWV IQKQAFYKQTGLGEEVAYEQELEQLLLEDRHDGEESNED
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 38 | 38 | - | – | |
| PANTHER | 2 | 259 | 258 | 6.2E-84 | – | |
| PANTHER | 2 | 259 | 258 | 6.2E-84 | ||
| Pfam | 6 | 201 | 196 | 5.4E-49 | ||
| Phobius | 39 | 57 | 19 | - | – | |
| Phobius | 58 | 62 | 5 | - | – | |
| Phobius | 63 | 84 | 22 | - | – | |
| Phobius | 85 | 279 | 195 | - | – | |
| Coils | 138 | 158 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0275100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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