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IPR021827

Source: InterPro

Description

IPR021827 is a Nucleoporin Nup186/Nup192/Nup205.

<p>Proteins in this family are components of the nuclear pore complex (NPC). These protein are called nucleoporins (NUPs), which can play the role of both NPC structural components and of docking or interaction partners for transiently associated nuclear transport factors. This entry includes Nup186/Nup192/Nup205. In budding yeasts, Nup192 is located to the NPC core at the nuclear membrane and is essential for de novo assembly of NPCs [[cite:PUB00063169]]. In humans, Nup205 forms a complex with NUP53, NUP93, NUP155 and lamin B [[cite:PUB00057985]].</p>

This description is obtained from EB-eye REST.

Associated GO terms

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005643
Cellular component Nuclear pore Any of the numerous similar discrete openings in the nuclear envelope of a eukaryotic cell, where the inner and outer nuclear membranes are joined.
Subterm of
Part of

Associated Lotus transcripts 3

Transcript Name Description Predicted domains Domain count
Lj0g3v0125289.1
– PREDICTED: nuclear pore complex protein Nup205-like isoform X2 [Cicer arietinum] gi|502172049|ref|XP_004515149.1|
Domains
10
Lj0g3v0125289.2
– PREDICTED: nuclear pore complex protein Nup205-like isoform X1 [Cicer arietinum] gi|502172044|ref|XP_004515148.1|
Domains
12
LotjaGi3g1v0381700.1
– Nuclear pore complex Nup205-like protein; TAIR: AT5G51200.2 nuclear pore complex protein (DUF3414); Swiss-Prot: sp|F4KBW6|NU205_ARATH Nuclear pore complex protein NUP205; TrEMBL-Plants: tr|K7KWK9|K7KWK9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0381700
Domains
13

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain Source Observations Saturation (%)
mobidb-lite MobiDBLite 1 33.33