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IPR024340 is a Sec16, central conserved domain.
<p>The yeast protein Sec16 plays a key role in the formation of coat protein II vesicles, which mediate protein transport from the endoplasmic reticulum (ER) to the Golgi apparatus [[cite:PUB00055985]]. Mammals have two isoforms of this protein - Sec16A and Sec16B. Sec16A appears to be the primary orthologue as it has the highest sequence similarity to the yeast sequence. Sec16B is involved in export of the peroxisomal membrane biogenesis factor peroxin 16 [[cite:PUB00056003]].</p> <p>This entry represents the central conserved domain (CCD) of Sec16, found in all isoforms of this protein. The CCD is necessary for targeting of the protein to the ER [[cite:PUB00056004]].</p>
This description is obtained from EB-eye REST.
| Transcript | Name | Description | Predicted domains | Domain count |
|---|---|---|---|---|
| – | PREDICTED: protein transport protein Sec16B-like isoform X1 [Cicer arietinum] gi|502160258|ref|XP_004511686.1| | 8 | ||
| – | PREDICTED: protein transport protein Sec16B-like isoform X1 [Cicer arietinum] gi|502160258|ref|XP_004511686.1| | 8 | ||
| – | Protein transport protein Sec16B; TAIR: AT5G47490.1 RGPR-like protein; Swiss-Prot: sp|Q9FGK8|SC16B_ARATH Protein transport protein SEC16B homolog; TrEMBL-Plants: tr|I1LGQ3|I1LGQ3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0423400 | 10 | ||
| – | Protein transport protein Sec16B; TAIR: AT5G47490.1 RGPR-like protein; Swiss-Prot: sp|Q9FGK8|SC16B_ARATH Protein transport protein SEC16B homolog; TrEMBL-Plants: tr|G7JIV9|G7JIV9_MEDTR RGPR-like protein; Found in the gene: LotjaGi4g1v0202800 | 9 | ||
| – | Protein transport protein Sec16B; TAIR: AT5G47490.1 RGPR-like protein; Swiss-Prot: sp|Q9FGK8|SC16B_ARATH Protein transport protein SEC16B homolog; TrEMBL-Plants: tr|G7JIV9|G7JIV9_MEDTR RGPR-like protein; Found in the gene: LotjaGi4g1v0202800 | 9 |
A list of co-occurring predicted domains within the L. japonicus gene space:
| Predicted domain | Source | Observations | Saturation (%) |
|---|---|---|---|
| mobidb-lite | MobiDBLite | 1 | 20.00 |