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IPR025761 is a FFD box.
<p>Sm and Sm-like proteins of the RNA-binding Lsm (like Sm) domain family are found in all domains of life and are generally involved in important RNA- processing tasks. Lsm13-16 homologues share a domain organisation consisting of a divergent N-terminal Lsm domain and a central or C-terminal consensus motif DFDF-x(7)-F. In few other sequences, the DFDF box is replaced by a DYDF or EFDF box [[cite:PUB00044226]].</p> <p>The FFD box and TFG box are two other strongly conserved sequence motifs(Y-x-K-x(3)-FFD-x-[IL]-S and [RKH]-x(2,5)-E-x(0-2)-[RK]-x(3,4)-[DE]-TFG respectively) contained in Lsm13-15, but not Lsm16, homologues. They succeed the DFDF-x(7)-F motif and are also predicted to be of helical nature [[cite:PUB00044226]].</p> <p>This entry represents the FFD box.</p>
This description is obtained from EB-eye REST.
| Transcript | Name | Description | Predicted domains | Domain count |
|---|---|---|---|---|
| – | PREDICTED: decapping 5-like protein-like isoform X1 [Cicer arietinum] gi|502161923|ref|XP_004512330.1| | 16 | ||
| – | Decapping 5; TAIR: AT1G26110.2 decapping 5; Swiss-Prot: sp|Q9C658|DCP5_ARATH Protein decapping 5; TrEMBL-Plants: tr|A0A1J7GP68|A0A1J7GP68_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0282700 | 19 | ||
| – | Protein decapping 5; TAIR: AT1G26110.2 decapping 5; Swiss-Prot: sp|Q9C658|DCP5_ARATH Protein decapping 5; TrEMBL-Plants: tr|A0A151SHY7|A0A151SHY7_CAJCA Protein LSM14 isogeny B; Found in the gene: LotjaGi2g1v0348300_LC | 7 | ||
| – | Decapping 5; TAIR: AT1G26110.1 decapping 5; Swiss-Prot: sp|Q9C658|DCP5_ARATH Protein decapping 5; TrEMBL-Plants: tr|G7I4Y0|G7I4Y0_MEDTR Protein decapping-like protein; Found in the gene: LotjaGi5g1v0268600 | 19 |
A list of co-occurring predicted domains within the L. japonicus gene space:
| Predicted domain | Source | Observations | Saturation (%) |
|---|---|---|---|
| mobidb-lite | MobiDBLite | 1 | 25.00 |