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IPR034110

Source: InterPro

Description

IPR034110 is a LSM domain containing 1, Sm domain.

<p>This entry represents the single Sm-like domain of LSM domain containing 1 (LSMD1) and similar eukaryotic proteins. They form heptameric and hexameric ring structures [[cite:PUB00081009]].</p> <p>LSMD1, also known as Mak31 or N-alpha-acetyltransferase 38, NatC auxiliary subunit (Naa38), is the auxillary component of the N-terminal acetyltransferase C (NatC) complex which catalyses acetylation of N-terminal methionine residues [[cite:PUB00009844]].</p>

This description is obtained from EB-eye REST.

Associated GO terms

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0031417
Cellular component NatC complex A conserved complex that catalyzes the transfer of an acetyl group to the N-terminal residue of a protein acceptor molecule that has a Met-Ile, Met-Leu, Met-Trp, or Met-Phe N-terminus. In Saccharomyces the complex includes Mak3p, Mak10p, and Mak31p.
Subterm of

Associated Lotus transcripts 2

Transcript Name Description Predicted domains Domain count
LotjaGi6g1v0311100.1
– Small nuclear ribonucleoprotein; TAIR: AT4G18372.1 Small nuclear ribonucleoprotein family protein; Swiss-Prot: sp|Q55A45|RSMB_DICDI Small nuclear ribonucleoprotein-associated protein B; TrEMBL-Plants: tr|I3SG12|I3SG12_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0311100
Domains
9
LotjaGi6g1v0311100.2
– Small nuclear ribonucleoprotein; TAIR: AT4G18372.1 Small nuclear ribonucleoprotein family protein; Swiss-Prot: sp|Q55A45|RSMB_DICDI Small nuclear ribonucleoprotein-associated protein B; TrEMBL-Plants: tr|I3SG12|I3SG12_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0311100
Domains
9

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain Source Observations Saturation (%)
cd06168 CDD 1 50.00