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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0311100 |
| Transcript ID | LotjaGi6g1v0311100.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Small nuclear ribonucleoprotein; TAIR: AT4G18372.1 Small nuclear ribonucleoprotein family protein; Swiss-Prot: sp|Q55A45|RSMB_DICDI Small nuclear ribonucleoprotein-associated protein B; TrEMBL-Plants: tr|I3SG12|I3SG12_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0311100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:62962784..62965258) extracted from Lotus japonicus Gifu genome v1.2.
GGGAAGCACGGACACTTCAAAACAGAGGCGTGTCCGCGTGTCCGACACGCGGACGACACGGACACGCCACCGACACGTGA CCGACACGTGTCGGACACGTCTGAGGCGTGTTTGAATAAAAAAACATTATTTCTTGGCTCGGACACAGCTTGGACACGGC GTGGACACGGCTTGTATATTGAGCCGACACACCTTTGTGGCTCGACACACATATGAGACACTTTGTACTATTTTTTTATT ATTTTCTGACTTAAAAAAAAGATAAATTAAAAATAAACAACCTTATCTAATTAAACATCAAACAAACGTAATAAAAAACA ATGATTCAGTGGGCTCATAACGCACAAACACGACGCTTCTCCTCTCCTCTCCTCTTGCGTGTTTCATCTCCTTCCTCCGC CAGCGGCGGCGCTCCTCCTTCTCCACCAGCGGCGGCGCTCCTCCTTCTCCACCAGCGGCGGCGCTCCTCCTTCTCCACCA GCGGTGACGTTTCCTCCTACCTCTTGCTCTTCTCTCTTGCTTCCCTTCTCTGTTACTTGAAATAGGTAAGACCTTTATTT TGTTTTCACTCTGATTTTGCAGTTTTTACTTGATAGAGAGAGTGAGCATGGTTAGATTATTTGTGTTTATGAGTATTGGA TATTGATATTCTGGTTTTTGCCTCCTTCTTTGATGTATTGTGAAGGCTTTCTTCCCTTGCTTTTATTGGTTCTTTGTTTT TCCTGTTTGTAATAGGGTTTGCACCCCTTAAGTGCAATTCATTTATTCAATCTCATTTTACTGCACATCATTGTACTTCA GAATTGTAAGATCAATCTGATTAGGTACCAATAGTGTTAATTACAAATATACAGATATACTATCCTAAATTAGTTTCTTA AGGTTTCTCCTAATCGATTATATTATATGTACATATACACTACCATAAATATGTAAGACTTTCTGAAATTTCTGATTACC ATACAGTCAGACTAATGGTTGAATGATGTTTTAGTTCAAACTCTCCTAATCTTTGGTAAAATGTAGCCTGATATTGATAA ATAGTACAATTTTCAAGCTTCTTTTGCTTCTATTAAGAAGCATTGCTACTGACTTAATTGTGTGTGTTATTGTATTGAAT TGATCAACATATTATAGTACAATGTTCTCTTAATTTTGTGAACATATTATCATGTTTTTTTAAATATATATATATATATA TATATATATATATATATATATATATAAGCCGTGTCCCCGTATCCTATTTTTTAGAGTTTAGCCGTGTCGGCGTTCCCGCC CGTGTCCGTGTCCCGTGTCCGTGTCCGAGTCCGTGCTTCATAGGTGTTGTCTTTTGCAGGTGATGTTCAAGTGCTAAGAT GGAACAAGAAGCAGAACAACCGATTCCCGTTCAAGTAGGGACCTCAGATAGTTCAAGTCGTGTGAGTCGGGTAAGGAAGC TGCTGTTTCGCCGGATGCTGGTGGGGATTAAAGATGGAAGATTCTTCTTGGGTGGCTTCTACTGCATTGACAAGCAGGGG AACATTATTCTCCAGGATGCTGTGGAGTATCGTAGCACTCGACGATCATCACCTTCTCCAATGGAGCAGCGGTGCCTTGG TCTCATTCTGATTCCTTCTTCTTGTCGGGCGACGTGTCATGTGGATTGCTCTATCGATGAACAGTTGTCCCTGCTATCAC TTCGTGAAACATGAGTACCTTAGGGTTTCATTTGTTCTGTTGGTGAACTGTGAATGGAATTCAATATTTTAGTGTGTTGT GTTGGAATATAGGATTGTGGCACAGAAGGAACATGGTTTAACATTGTGTAACCTGTTTTGTTGTGATTTATTTGATTGGT CAAGCTGCTTTTGTAATTGGGATTCTGAATTTGATTCATCAACTATTATTTGGGTGTGAGCGAAACTTGTATCTTGGAAA TGAGGGAAAGCTGCATTTCCTTTGTTAAAAATAAGAAAAGAAAGAAAATTAGAAAAAGGTGAACAATTTCTGGTTTGCTT GATAACAAGTAGGCATCCTTTTATGCAGGAATCTGTACAAGTAATAGAAGAAGGTCTGCTTAAGACTCCATAAACTTGAT AAAGTTTCTTCTGAAGTGATCTGTTCAGTTTGGAAATGAAAAGCTGACAAACCATTTGTTGAATGTGAGCAATTTGATGT TAATTCTTACACTCAAAGCTCGGAGTTTTTAAAATTTGCTTAATCTGTGAATCCAAGTTTCACTTATTGTATGTTTGTAT GCATGTGTATGGAGCGTAATGCTGTTTTGCTGTTAACAGTGCTTCGTCTACAATACTGTGACCATAACTGTAATGCTGTT TTGCTGTTAACAGTGCTTCCAAATAGTGTTTGAAAATTGAAAAAAAAATCAAACTTTGAAGGAGATATTTTGCAGCTGCT CAAGTCAAATACTTGTTTAAGCTGCTCAAGTCAAATACTTGTTTAACCTCATTCATTTTACTGTGACCTCTCCTT
CDS sequence (LotjaGi6g1v0311100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAACAAGAAGCAGAACAACCGATTCCCGTTCAAGTAGGGACCTCAGATAGTTCAAGTCGTGTGAGTCGGGTAAGGAA GCTGCTGTTTCGCCGGATGCTGGTGGGGATTAAAGATGGAAGATTCTTCTTGGGTGGCTTCTACTGCATTGACAAGCAGG GGAACATTATTCTCCAGGATGCTGTGGAGTATCGTAGCACTCGACGATCATCACCTTCTCCAATGGAGCAGCGGTGCCTT GGTCTCATTCTGATTCCTTCTTCTTGTCGGGCGACGTGTCATGTGGATTGCTCTATCGATGAACAGTTGTCCCTGCTATC ACTTCGTGAAACATGA
Protein sequence (LotjaGi6g1v0311100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEQEAEQPIPVQVGTSDSSSRVSRVRKLLFRRMLVGIKDGRFFLGGFYCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCL GLILIPSSCRATCHVDCSIDEQLSLLSLRET
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 8 | 110 | 103 | 2.3E-48 | – | |
| PANTHER | 8 | 110 | 103 | 2.3E-48 | ||
| Gene3D | 18 | 101 | 84 | 6.3E-16 | – | |
| SUPERFAMILY | 22 | 97 | 76 | 1.94E-13 | ||
| Pfam | 25 | 85 | 61 | 4.0E-7 | ||
| CDD | 27 | 96 | 70 | 1.47804E-23 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | NatC complex | A conserved complex that catalyzes the transfer of an acetyl group to the N-terminal residue of a protein acceptor molecule that has a Met-Ile, Met-Leu, Met-Trp, or Met-Phe N-terminus. In Saccharomyces the complex includes Mak3p, Mak10p, and Mak31p. |
Expression pattern of LotjaGi6g1v0311100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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