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IPR036366 is a PGBD superfamily.
<p>This superfamily represents peptidoglycan binding domain (PGBD). PGBD may have a general peptidoglycan binding function. It has a core structure consisting of a closed, three-helical bundle with a left-handed twist. It is found at the N or C terminus of a variety of enzymes involved in bacterial cell wall degradation [[cite:PUB00006403], [cite:PUB00003979], [cite:PUB00003115]]. Examples are:</p> <ul> <li>Muramoyl-pentapeptide carboxypeptidase ([ec:3.4.17.8])</li><li>N-acetylmuramoyl-L-alanine amidase cwlA precursor (cell wall hydrolase, autolysin, [ec:3.5.1.28])</li> <li>Autolytic lysozyme (1,4-beta-N-acetylmuramidase, autolysin, [ec:3.2.1.17])</li> <li>Membrane-bound lytic murein transglycosylase B</li> <li>Zinc-containing D-alanyl-D-alanine-cleaving carboxypeptidase, VanX [[cite:PUB00013218]].</li> </ul>
This description is obtained from EB-eye REST.
| Transcript | Name | Description | Predicted domains | Domain count |
|---|---|---|---|---|
| – | Chaperone protein dnaJ-like protein; TAIR: AT4G13670.1 plastid transcriptionally active 5; Swiss-Prot: sp|L7N653|CWLM_MYCTU N-acetylmuramoyl-L-alanine amidase CwlM; TrEMBL-Plants: tr|K7N4K1|K7N4K1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0163300 | 16 |
A list of co-occurring predicted domains within the L. japonicus gene space:
| Predicted domain | Source | Observations | Saturation (%) |
|---|---|---|---|
| SSF57938 | SUPERFAMILY | 1 | 100.00 |