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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0163300 |
| Transcript ID | LotjaGi5g1v0163300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Chaperone protein dnaJ-like protein; TAIR: AT4G13670.1 plastid transcriptionally active 5; Swiss-Prot: sp|L7N653|CWLM_MYCTU N-acetylmuramoyl-L-alanine amidase CwlM; TrEMBL-Plants: tr|K7N4K1|K7N4K1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0163300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:41874751..41878759) extracted from Lotus japonicus Gifu genome v1.2.
CAAGATAATAAAGCAATGAAGAAACAACAACAAATATCTCTGTAATATTTTCATATCCATATCCATGGCCTTCCCTTTTT CACACACTGCCAATCACAACGGCAATGTCTTCCTCCTCTCTCGTTCCCTTCACCGTAACCGCCACTATCCTTTTCAACAG AACCCTCTCACTTCCCAAACCTCACTTCATCTCTCTCTCCTATAAATCCAAACCCTCCTCCGTCTGCTACTGCTCCAACT CCGATCGCGAGGACCAACGGTGGCTGCGCGAGGAGCAGCGGTGGCTGCGCGAGGAACAGCGCTGGCTCCGCGAGGAGCAG CGCTGGACTCGCGACCGCGAAGAGCTTCTCAGGGAGATTTCCGAGCTTAAGCTGCAGATCCAAACCCTAGAACACCGCCT TCTGTCTTCACCGTCTTCGATTTCCGACGCGGTTGCGAAGGTGGCGTCGTTGTTGCAGGTGTTGAAGGACAAGGATTTGG TTCTCGAGAGTGGTTCCAGTCTCCGGAGGTTGTTGCTTGAGGAGGAGAACACGGAGGAGAAGGAATCTGAAGAGGTTATT GAACATGAGAAGGAGATTGTGGTGGTTGAGGAGGCTGCTGCTGCTTCTAGGGTTGAAAAGAGGAGCACGTTGCGGGTAGG TTCTGAAGGAGAAGAGGTTCGCCAGATGCAGGTTCGATTTTGCAATCTGATTCTACTTTTAATTCATTTTTGTCATGATG TATGCTACCATGGATTCGATTTTTTGCGGTTTGCGTGGATGATGCTGGTAATTTGGTGCATTGTGAAATCTTAGTTTTGT GCTGAATTTTCCGTGTTATGGCAGGAAGCGTTGCTCAAATTGGGGTTCTATTCTGGGGAGGAAGACATGGAGTTTTCCAG CTTCTCGAGTGGAACTGAGCGTGCTGTGAAGACTTGGCAAGTTAGTGTTGTTTTGCACAATATATGTAGTCTTGATCATG AAAACAAAAATAGTTGTGTTAGATTAGTTTTCGTTATAACCGGTTTATTCGAGTAATGAGATTGAGTACCATACATGTAT TGTTTTCTATATGCTATCCTATTTATGGGCATTTTTATTTTCATGATTTTGATGAGTATGCTATGTTGTTTGATAGGCTT CATTAGGTGCCCCTGAGGATGGTATCATGACATCTGAACTTATTGAAAGGTTATATTTGGAGATAGCGACGCCGACTAAT GACAAGGGTAGCACGAATGAAAATAAAATCTCTACTACAGTCTTACGAAAGGTATGCTGGTTATCCAAGATGTACTTTCT GCTCTCTATTCAGTGCTGAGAACCTCCCACGATTTTGAGAGTTTAGCTTAAACGTATTGTGCAGAAACAGTTGTAGCTTT AATATCATGTCATGTTCTAGGAGATTGACCATGTGAACTAAGTCATAACTAAACAGGATTGTTTGTGTATTCTTCATGGA AATCGGAATAAGGAATCGAATGTATATGCGATATACTTTTTTGTTTGGATTTTTTAAGGTACAAAGTTTGGTTTTTGATA GAGCACAAATGTGTTTTCACTCATTGACAATAGTAGAGATTTTACCGTCCTCCACCAATTCCACTACTCACTAAATATAG GAATTGTGTTATATCTCTAAAACAATGAAGAGACAAAATGTTACAGCTGTCGAATTTGAATCTTTGTTATTCTGTGGATT CTAGGAAAGTGAAAATGGATCTGCAGTTGCTTCTGTAACAGAAATTTCCGACATTCAGCAAAAGGTAGTGGGGGGAGGTG TTAAAGAAACAGAAGCCTCCCGTCCGAGAGTTTTCCTCCTTGGAGAGAATCGATGGGAAGATTCCTCAAAACTTGGTGCG AGCGATGGAGTTGATAGGAGCAAGAACAAGGATGGAACCACAAAATGCGTTCAATGTCGTGGGGAAGGTCGCTTGCTTTG TACAGGTTTGTAGTTGTCCGTATAGTTTACGCCATATTTGTTTCATTAATCATTGTTCTGGAAGAAAAATCTCATCGTTA AATTTACTTTTAATTCAATCTAAGCTCCCGGAAACGCAGCAGTTCTTAAAAAAGTATCATGTTTGTTGAATATCTCAATA GAGAACTTTACGGTTAGCAATCTTGGGGTACTTCATACGGTATATAAGCCTTGAAAACTTGCTCTGATACCAACTTGAAA TAGATAAACAAATCTTAACTATATCTCCATGAGATAAGACTAATAATAAACTAAATCTTAACAGATATTCAACAATGTTG AATTTTCTAGGATGTACACTTTTTTTTTAAATCTCAAGATGAACTTGAATTAAATTTCTCCTGTATCCATTGCCTTCAAT ATATTCCCGTTTGGAAGAAAATGTCTTAAGTAGCAATGCATGATTTAAGTTATAAGGTCACCAGTCACTGACCTTATGAA AATGGAAATAAGTTACTTTTAGTTCTTACAAACCTTCTCTTGACTGCTATCGACATTCTCATCATGATCTTCAACTGTCA CTTCAGTGACCGGTTCCTTTGATGCCTTTGATTCTCCAATTTTTTTCAATAGATAAAGTTGTTTGAATGTCTTCTATTTT CACTCGGTACGATCATTATTTCCCTTGGTGGTTTTTGATGTCTGATTCCTCCAACTGGAATTCCTCATTAATTATATACT GCCGTCCACTCTTTAGATGTTCACGAAGGCTGTTCATTTTTCTTCATAAGTTAAGCTTGTTGGCAAGGCCTCTCCTCCCT ATTCATAAGAGTTAGTCGAATAGCTGAAAATGTGAACTCTGGTCAATCCCAGTTTGACTATTCCAAATTGACTCTTAAGT CTTAACATTTGATTTGTAGACAATAGGAAAATCAATAACAACTCTACTGTGTTTCTTCGAGTTCAATCTAACATGGTCAA TAAGAATCATAATAGTAGTACTTAACTAATCATCACAGCAGGCAATGGCCCAATGGCCCAATGCCCCAATGAAGTAATGA GAGTCAAGGTGGTTTAATTTCACATTTAGGTCTCGTATGATAACTCTCACCAATCACCAATACTAGTAAAATCATAATAT CAGTTTCTGTGAGATTGACATCTGCATGATACCAATTTCCTAAATGTATAATTTATGGTCAAATTTGGAAATATCCCATT TATCTCCAGTTCCGTTTCTTAATTGCAGAATGTGATGGAGGTGGCGAGCCAAATATTGAGCCTCAAGTAAGGGATATTTA AGTTCTTTTTTTTTTAACAAAATTTACTTTTGTAGTTATTTTCTGTTTTGCAATAGCTTTTGAACTTACCAGCAAGTTCA CTGTTGCAGTTTATGGAATTGGTGGAGGACGGTACAAAGTGCCCATACTGTGAAGGCCTAGGGTACACTCCATGTGATTT ATGTGGAGGGATACCTACGGTATAGGTTGACATATATTTCGTCATCATTCATACAGGTATATAATTAACATTATCAATCC ATCTCAAAATTTTGTATGTCTAGTTTGTTTATTCTGTTCCTGTTTATTCCTGAATCGGTAAATCCTGATTGCACAGATAA TGTAATCCAATCTTAGAGTGAACATTTGCGCAGCTTTGAAAACAGTATAATGTATTAGATAAGCTTTTTCCTTCTTTTTT TTTTCTTTCTTTCATACATTGGCTAAAAAATTATCTTCAAAATCTAGAGGAACGAATGCCACCAATTTCAGCTCAGATAA CAACAAAGTCAAAGTCGAATTTCCCCCTCTTGCTCATTTTTTAACCATTGATAATCATCGTAGCCATCGCTATGGAACAA ATTGAGCTAAATCTTCATTAGAGTCAAACACGCGTGTGACTGGCAAACGAGAGTTACTTCAACAGCTCAGTTAAACAACT ATAACAAATCGTTGTCCTTGGTCTTGCTGCTGAGGGCTTGGATAATGTTGATGTATTTAGAACATTTCCAATGCTAGTTC TTAATTTTTAGTTCTTAGCTCTTAGCACTATTCATGTGGGCTCGTACTGTCACATGTGCTTAAGCAACTCTTTGCAGATT TTGCTTCAA
CDS sequence (LotjaGi5g1v0163300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTTCCTCCTCTCTCGTTCCCTTCACCGTAACCGCCACTATCCTTTTCAACAGAACCCTCTCACTTCCCAAACCTCA CTTCATCTCTCTCTCCTATAAATCCAAACCCTCCTCCGTCTGCTACTGCTCCAACTCCGATCGCGAGGACCAACGGTGGC TGCGCGAGGAGCAGCGGTGGCTGCGCGAGGAACAGCGCTGGCTCCGCGAGGAGCAGCGCTGGACTCGCGACCGCGAAGAG CTTCTCAGGGAGATTTCCGAGCTTAAGCTGCAGATCCAAACCCTAGAACACCGCCTTCTGTCTTCACCGTCTTCGATTTC CGACGCGGTTGCGAAGGTGGCGTCGTTGTTGCAGGTGTTGAAGGACAAGGATTTGGTTCTCGAGAGTGGTTCCAGTCTCC GGAGGTTGTTGCTTGAGGAGGAGAACACGGAGGAGAAGGAATCTGAAGAGGTTATTGAACATGAGAAGGAGATTGTGGTG GTTGAGGAGGCTGCTGCTGCTTCTAGGGTTGAAAAGAGGAGCACGTTGCGGGTAGGTTCTGAAGGAGAAGAGGTTCGCCA GATGCAGGAAGCGTTGCTCAAATTGGGGTTCTATTCTGGGGAGGAAGACATGGAGTTTTCCAGCTTCTCGAGTGGAACTG AGCGTGCTGTGAAGACTTGGCAAGCTTCATTAGGTGCCCCTGAGGATGGTATCATGACATCTGAACTTATTGAAAGGTTA TATTTGGAGATAGCGACGCCGACTAATGACAAGGGTAGCACGAATGAAAATAAAATCTCTACTACAGTCTTACGAAAGGA AAGTGAAAATGGATCTGCAGTTGCTTCTGTAACAGAAATTTCCGACATTCAGCAAAAGGTAGTGGGGGGAGGTGTTAAAG AAACAGAAGCCTCCCGTCCGAGAGTTTTCCTCCTTGGAGAGAATCGATGGGAAGATTCCTCAAAACTTGGTGCGAGCGAT GGAGTTGATAGGAGCAAGAACAAGGATGGAACCACAAAATGCGTTCAATGTCGTGGGGAAGGTCGCTTGCTTTGTACAGA ATGTGATGGAGGTGGCGAGCCAAATATTGAGCCTCAATTTATGGAATTGGTGGAGGACGGTACAAAGTGCCCATACTGTG AAGGCCTAGGGTACACTCCATGTGATTTATGTGGAGGGATACCTACGGTATAG
Protein sequence (LotjaGi5g1v0163300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSSSSLVPFTVTATILFNRTLSLPKPHFISLSYKSKPSSVCYCSNSDREDQRWLREEQRWLREEQRWLREEQRWTRDREE LLREISELKLQIQTLEHRLLSSPSSISDAVAKVASLLQVLKDKDLVLESGSSLRRLLLEEENTEEKESEEVIEHEKEIVV VEEAAAASRVEKRSTLRVGSEGEEVRQMQEALLKLGFYSGEEDMEFSSFSSGTERAVKTWQASLGAPEDGIMTSELIERL YLEIATPTNDKGSTNENKISTTVLRKESENGSAVASVTEISDIQQKVVGGGVKETEASRPRVFLLGENRWEDSSKLGASD GVDRSKNKDGTTKCVQCRGEGRLLCTECDGGGEPNIEPQFMELVEDGTKCPYCEGLGYTPCDLCGGIPTV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 5 | 5 | - | – | |
| Phobius | 1 | 22 | 22 | - | – | |
| Phobius | 6 | 17 | 12 | - | – | |
| Phobius | 18 | 22 | 5 | - | – | |
| Phobius | 23 | 390 | 368 | - | – | |
| Coils | 71 | 98 | 28 | - | – | |
| PANTHER | 80 | 387 | 308 | 2.0E-121 | – | |
| PANTHER | 80 | 387 | 308 | 2.0E-121 | – | |
| Coils | 137 | 157 | 21 | - | – | |
| Gene3D | 167 | 252 | 86 | 1.5E-13 | ||
| SUPERFAMILY | 174 | 243 | 70 | 4.45E-13 | ||
| Pfam | 182 | 240 | 59 | 1.6E-10 | ||
| SUPERFAMILY | 323 | 387 | 65 | 6.02E-6 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0163300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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