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IPR038132

Source: InterPro

Description

IPR038132 is a Vps16, C-terminal domain superfamily.

<p>Vps16 forms part of the Class C vacuolar protein sorting (Vps) complex. It is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast [[cite:PUB00008662]]. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport [[cite:PUB00008663]]. The role of VPS16 in this complex is not known.</p> <p>The C-terminal domain of Vps16 binds to Vps33 for integration into the HOPS complex [[cite:PUB00088227], [cite:PUB00097428]].</p>

This description is obtained from EB-eye REST.

Associated GO terms

Unable to find any GO terms for the transcript with the identifier.

Associated Lotus transcripts 2

Transcript Name Description Predicted domains Domain count
LotjaGi6g1v0174000.1
– Vacuolar protein sorting-associated protein 16-like protein; TAIR: AT2G38020.1 vacuoleless1 (VCL1); Swiss-Prot: sp|Q93VQ0|VCL1_ARATH Protein VACUOLELESS1; TrEMBL-Plants: tr|G7IXE7|G7IXE7_MEDTR Vacuolar protein sorting-associated-like protein; Found in the gene: LotjaGi6g1v0174000
Domains
13
LotjaGi6g1v0174000.2
– Vacuolar protein sorting-associated protein 16-like protein; TAIR: AT2G38020.1 vacuoleless1 (VCL1); Swiss-Prot: sp|Q93VQ0|VCL1_ARATH Protein VACUOLELESS1; TrEMBL-Plants: tr|G7IXE7|G7IXE7_MEDTR Vacuolar protein sorting-associated-like protein; Found in the gene: LotjaGi6g1v0174000
Domains
13

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain Source Observations Saturation (%)
SSF50978 SUPERFAMILY 1 50.00