Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
IPR006925 is a Vps16, C-terminal.
<p>Vps16 forms part of the Class C vacuolar protein sorting (Vps) complex. It is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast [[cite:PUB00008662]]. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport [[cite:PUB00008663]]. The role of VPS16 in this complex is not known.</p> <p>The C-terminal domain of Vps16 binds to Vps33 for integration into the HOPS complex [[cite:PUB00088227], [cite:PUB00097428]].</p>
This description is obtained from EB-eye REST.
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Cytoplasm | All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. | ||
| Biological process | Intracellular protein transport | The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell. |
| Transcript | Name | Description | Predicted domains | Domain count |
|---|---|---|---|---|
| – | PREDICTED: vacuolar protein sorting-associated protein 16 homolog [Glycine max] gi|356567439|ref|XP_003551927.1| | 5 | ||
| – | PREDICTED: vacuolar protein sorting-associated protein 16 homolog [Cicer arietinum] gi|502128485|ref|XP_004499978.1| | 12 | ||
| – | Vacuolar protein sorting-associated protein 16-like protein; TAIR: AT2G38020.1 vacuoleless1 (VCL1); Swiss-Prot: sp|Q93VQ0|VCL1_ARATH Protein VACUOLELESS1; TrEMBL-Plants: tr|G7IXE7|G7IXE7_MEDTR Vacuolar protein sorting-associated-like protein; Found in the gene: LotjaGi6g1v0174000 | 13 | ||
| – | Vacuolar protein sorting-associated protein 16-like protein; TAIR: AT2G38020.1 vacuoleless1 (VCL1); Swiss-Prot: sp|Q93VQ0|VCL1_ARATH Protein VACUOLELESS1; TrEMBL-Plants: tr|G7IXE7|G7IXE7_MEDTR Vacuolar protein sorting-associated-like protein; Found in the gene: LotjaGi6g1v0174000 | 13 |
A list of co-occurring predicted domains within the L. japonicus gene space:
| Predicted domain | Source | Observations | Saturation (%) |
|---|---|---|---|
| SSF50978 | SUPERFAMILY | 1 | 25.00 |