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IPR039317

Source: InterPro

Description

IPR039317 is a Protein time for coffee.

<p>Arabidopsis TIME FOR COFFEE (TIC) is a circadian regulator that coordinates developmental, metabolic, and environmental signals [[cite:PUB00089434], [cite:PUB00089430]]. It controls root meristem size by changes in auxin accumulation [[cite:PUB00089428]].</p>

This description is obtained from EB-eye REST.

Associated GO terms

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0042752
Biological process Regulation of circadian rhythm Any process that modulates the frequency, rate or extent of a circadian rhythm. A circadian rhythm is a biological process in an organism that recurs with a regularity of approximately 24 hours.
Subterm of
Regulates

Associated Lotus transcripts 6

Transcript Name Description Predicted domains Domain count
LotjaGi1g1v0718500.1
– Protein TIME FOR COFFEE; TAIR: AT3G22380.1 time for coffee; Swiss-Prot: sp|Q94KE2|TIC_ARATH Protein TIME FOR COFFEE; TrEMBL-Plants: tr|A0A0S3RXX2|A0A0S3RXX2_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0718500
Domains
4
LotjaGi5g1v0167600.1
– Protein TIME FOR COFFEE; TAIR: AT3G22380.3 time for coffee; Swiss-Prot: sp|Q94KE2|TIC_ARATH Protein TIME FOR COFFEE; TrEMBL-Plants: tr|I1JFA0|I1JFA0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0167600
Domains
8
LotjaGi5g1v0167600.2
– Protein TIME FOR COFFEE; TAIR: AT3G22380.3 time for coffee; Swiss-Prot: sp|Q94KE2|TIC_ARATH Protein TIME FOR COFFEE; TrEMBL-Plants: tr|I1JFA0|I1JFA0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0167600
Domains
4
LotjaGi5g1v0167600.3
– Protein TIME FOR COFFEE; TAIR: AT3G22380.3 time for coffee; Swiss-Prot: sp|Q94KE2|TIC_ARATH Protein TIME FOR COFFEE; TrEMBL-Plants: tr|I1JFA0|I1JFA0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0167600
Domains
8
LotjaGi5g1v0167600.4
– Protein TIME FOR COFFEE; TAIR: AT3G22380.3 time for coffee; Swiss-Prot: sp|Q94KE2|TIC_ARATH Protein TIME FOR COFFEE; TrEMBL-Plants: tr|I1JFA0|I1JFA0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0167600
Domains
4
LotjaGi5g1v0315000.1
– TIME FOR coffee-like protein, putative; TAIR: AT3G22380.1 time for coffee; Swiss-Prot: sp|Q94KE2|TIC_ARATH Protein TIME FOR COFFEE; TrEMBL-Plants: tr|G7ID76|G7ID76_MEDTR TIME FOR coffee-like protein, putative; Found in the gene: LotjaGi5g1v0315000
Domains
4

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain Source Observations Saturation (%)
mobidb-lite MobiDBLite 1 16.67