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LotjaGi5g1v0167600.1

Overview

Field Value
Gene ID LotjaGi5g1v0167600
Transcript ID LotjaGi5g1v0167600.1
Related isoforms 3
Lotus japonicus genome version Gifu v1.2
Description Protein TIME FOR COFFEE; TAIR: AT3G22380.3 time for coffee; Swiss-Prot: sp|Q94KE2|TIC_ARATH Protein TIME FOR COFFEE; TrEMBL-Plants: tr|I1JFA0|I1JFA0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0167600
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr5:42736290..42741733) extracted from Lotus japonicus Gifu genome v1.2.

CCCAACACAGAAATTAAAATAAAAAGGGTTTAGAGAGAGAAGAGGCAGCAGAAGTGTTTGCTCTGACAAAATTGAGCGCC GCCGTCAATACTGATCTTCCGGTGACGCGCCGCTGTTGCTATCGGAAACTGACTCGCCGTCGTTCAGTTTGATTACATGT TAGAAGGAAGAAGAAGAAAAGCATGGACAGAACCAGAGAATCTAGAAGATCATCCATGACCATGGCGTCCTCCACCAATG GATTTCCCACGCGCCGACCTCGAAGTGTTCCTCTCAGAGACTCTTCCGGTATCATCACCATCTTCATCTTCTTCTTCTTC TTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTGTGTGTCTGTGTCTGTGTGTTGGTTCTGACGATTTTT TGTTTCATGGCAGAGGAAGGAGCGGTGGTGCAGGTGAGGGAAGCTTCGAGCAAGAAGGGAAGGAATCGAGAGAAGGATAG GGATTCGTCGAGTCGGAGCAAGAGGAGGAGAGGCTCTCACTCTCACAGGGAAGAAGGCGAACCAAGCACTGAAGATAGCG TCGGGAATGAACAAGACGACGACGTTCGAGACGCTGGGATTTCTCGGATCCGTTCCTCGTCTTCCGCTTCTGATAAGAGC CACCACCGCCGGAATTTTACGGCGGCGAAGCCTCCCCCGCCCCGGCCGCCGTTCAAGGTAGTCGATGAGGTGATCGGCGT GGTAGTTCCCAGGAAGGCCCGTTCAGGTTGGTATTACACAAATGCGGTTTTTCGAATTTTTGTTTGTTTTCGTTTCCCTC GTTTTTGGTATCTTTGGGAATTGGGTTTCATTTGATTTTCTCTCTTTGTCCTTTGTGGTTGATTAATGTGTGTTTGCAGC TTCTTTGAAAAGGTTGCATGAGAGCTGGGTCTCCGGGGGCACCGGCGGTGGGGAGAATCGGACTTTCCGGCAACGGTCGA ATTCTCCGGGAAGGCGAATTGTTGAACCGGCCTGGCCTTCTTCTTCGAATGCTTCTGTTAGGAAGAAGATGGTCAGCGCA ATTTTTTCAATTTTGTTTTTTTGTGGGATTTGTTATTTTGAAGGACTAAGTTTTGAGATGTTTGTGAATGTGATGTTTAA GAAAGCGATTGAAGCTGAACCAGAGACATTGAAATTGGCTTCATCGGACATCGAGATTGAGATAGCCGAGCTTTTAACCG GTTTGAGGAGTTCAAAGGGCCACGAGTTTTCATCGCAGAAGCTGGAAGCAAGCATGGATCACCACGCCTCAGAGTCTTGT CACTCTAAGGATATTGGTGGGTTGAGTTTTGTAGATTCTCTCTTTTATCATTGTTTATTATTTTTGTTGACTTTCTCATT GGCATTTTTATCAGCAGAGAAGAATAAATTGGAAGAGTTTAAAGATCCGAAGTATTCGTGTGAAGATTTATTAAGAATTC AGGGCCAGGAGCAACCAGCAGATGTGGATTGTCATGAAAATGGGTCATCAGCGGTTCCAAAAGAGGACATTGGGGAAGAC AAAGTGAATCCAGGTGCTGGATTTGGTGGTGCTTATGTAGGTACTGGAAGATTTGATGCCCCTACAAATGAATCACAATC ATGCTCCAAGTTGGATGCTGATAAACAGGATTCAGCTTCTACCAGAATGTGAGCACCAATGAATGATAATATTTTTTTTT CTTGCTCTTGCATTTGTTTATTTCGATTTGGATACCTGATCAATGATCCCATTTGGTTGTGGCTCGATTTTTTAGGATGT GTGATGTTCCTGATGCCAATACCAAACGAGTTGGCAAGTTTGAGATAGATCTGATGGTGAGGATCCTTCTAGTTTGTATT CTGGTTACATTTTCATTGCTTTTTACTGTCTGGTATCTGAAAGATTGCCTTTCCAACAGGCTACTCCTCCTATGATGCTA TCCCTAGAAGGGGATGATTTGTCAAAGAGTCAATTGACTTCAGAAACTAAAGCTTTGGCACCGGATGTGGAAATGGTGAG TAGGTTTAGCAATTTTGAAATTGTTTTTATTTGCTCATATCTCTTTACTCCAACCTGTCAACACTTGTGCTGTTGCAGAA GAGGATAGACAGTATTGAAGTTGAAGACAAGGCAGAAAGACCAGTTAACCAAGAGAAAACTCCGGAAGAAATTGAAGAGG CGAATATGATCGAGTTTAAGAAAAAATTGAATGTGCTAAAACATGATTTGGTGACGCCAAACAATGACAATGACATAATG ACAAACAATAAATTGGAAAAGCAGGATAGGAATAAGGAACAGCCAAGTATATCGTCAAATCCCAAAGTGCAGAAAATTGG TAATTTTTTTTGATATTTTTTTAATGTTCAGGATTGTATGTCAACTCTGATTTTGACCCATGTGCTGATTGTTTATAACT TAGACTTCACCCTTGTTTCCTTCTTCAGATCATTCTAGTTCAGTGCCTTTGCCAGCTGGTGTATCAGGACGGCCAAGCAA TCTCACTTCTATTGGGTATTACATCAGCACTTTCCTAGAAACATGTTTTATTTTCTTCATTCTTTTACATAGTTTTTGGT CATATCAATATTCTGACTAAGGTTAATAATTATGATTGGCAGATGCAAGCCACTTTTGCAGAAAGTTGGGGAAACAGATA AAACCAAAGGAGGATCATCGAAATCCCCACAGGTATTACAAGTTCTCATAAAATTGTGTTCTTCTGTTTGTGCGTATTGG AGTCCTTTCTTTATTCCTAGTTTCTGACCGGTGCCCGTATACTAGCGCCTCTCCTATCTTTATGTGACGGTATCGTGAAG AATTCCTTCATAATTCAAACATGCAGGGTGTGAATTCTGTTCTCTCTCAACCAAAACGAAAGAGATGTGCAACCCATTAT TACATTGCTCGTAACATCTTACACCAGCAGTATACAAAGATGAGCCCCCCTTTACCAGCTGCTATTGGCCCAGGTTCTCT GTGTGGCATTAAACCCAACAATGTCGACTGTGTACCCTCTTCTAGCAAGCAATCTCAAAAACACTTTCCAGGTGTAAACC AAAAAGGTGCACAAGAGAAAGTGTTGGTTGCTACAAGCGATCCTAGTCTTGCTGCATTTAGAAGTTCTAATAATGCCAAC CCAATGGATTCAACACACATGCAGCTTGTGCTCCAACAAGGTCCATATCCTGGCTCAATTGGTACTCTAGTGGTATGGTC TTGTTATTTAACTGTTTCTATACAAAAAAATAGATTTAATCCATTTTACTGGTTGCCCCAATGGGTCTTATTTTAGAAAG TAATTTGCTTTAATTTTGAATGTAGCAGGGTCCTGCTTTTGTATTTGGTCCGGGCCAGCATCAAGCATCAGTAGCAGCAC CTACTAATCAGGCAGGCGGTGTGAATTTTCCCAGCAGTGCTTCCTCTTATAATAGGTCTCATAGTTCGGTTGCCGGATCT CTTGATACCTCTTCTACTCTGCCTGCAGCTGCTGCTGCAATGAGCTGTAGCTACCCAAAATTTTCAGCCAACGATTCTCC GTATGTGACTATAGTTTCCAATAATGGGTATTCATTCCCCTATTCAACTGCTGTGATCAGAGGTGTAAGTCCTGGTGGGC CTTTCTACTCTTCTCAAATACTCCATCCTCTTCAGTATCCACAACAGCACCCTCACTCAAAAGTACTGGTTCAACCAAGT TATCCTAATGCAAGCATATCAAGTATTTCATCATCTCATAAGCAGTCACAGGGTGCACAAGGTAATGGTAATAATATCAT GACCTCTAAAACAAGGGAACAGCCGTCACAAAAGCAAAGAACTCCCCAGTCTCATCCTCGGAAGCATGAGGTTGTTGTGG GGGGCGAGAACGTACCATCTGTTGCTAATCGAACATCTTATGCACAGAAGAATGTGCATGGGCAGAACTTCACAATTCCA GTTCAGCCTATGAACCTTTCTTTTAAGCCATCTGCAACATCAGATAAAGCTGGTGGCAACAGTGGGATTTTTGCTGACAA GCAGCAGAAACAACAGGCTTCAAAGGGGGGAGTTGAAATTGTACCATCTCAAGCGTTTGCAGTATCGTTTGCTACATTTA ATGGGACCAGTGTTCCTTCAAGCCTTAACTTCTCATCCATGGCACAGAACCCACAGATACTCCACAGTCTGCCTGATATT GCGTACCAAGGATATCCAGCTGCAAGTACACCTTATACTACTCAGCAGAAGACTTGTTCAATTACTGGAGATAAGAGTGG AGGTAATTCCTCCCAACAAGATGATGTTAAGAAGATCACTCATGGAAAGTCACCAACCATTGGGCCAACTACTCTTGTCT TTGACAATTCATCAAAGAATCAAAACTTTGTGATGAGTAGTACGAGTGGAAACTGGCCTAGTGGCGCCATTGCTTCAACT GCGATAATAAACATGCCTTTTTCCGGTAATGCTTCAGGTTCTCAACAGCAGCCGCAGTCGCTTCAGCTTCAGAACATGCA ACAGCCGCGACCTGCCATGTCTACTCGAAAGAAAGCATTATCTGCCACAAAGTTTGCAATGGACACCCCTGTTTTGTCAC AAAGCCTTGCTCAGTGCAAAAGTTCTAATCAAAATTCTCTCTCTAAGACCTTGGGAAGAACCACAGCTTCTCATGTTCAT CACAAGTCTATTATAACATCTAGTGCTCCAACCGTCAAAAGTTTACCTCAGGAGAAAGGAAGAGACTCAAAGGGTCATAA GCAAATTTCTTTTGGGGGAAATTACACCACTTCGTTGCCAACCCAAGGAGCAAAGGCAACAACCACTCAATAACAACCAG CTTTTTTATACAACAGCAACTGAAACTTCATTTAATGGGGGCAACTTGGTGCCAAATTCAGAGGGAATGAAAGTTAGTTC GTCAGTTCCTTCACATTCTCAATAGACCCTGTATTCTTCTGCTGGCAGTGGCAAAAAGCCTTCCCCAGTTTGTATGCCCC ATCAATCCTGCGCCAAGGTAGAATATATTCTCCGCAATCGCAGATTTAGTCTCAATCTTTCGTTATCGTCATATATTCTG GAGGCCCTTGGCCTTGATGCTACTGTTTCATGTTCAAGCTGCAATTTACAGGTTTATTACAGGGTATGATTGAAGGAAAA AGTTTTGGTAGCTTATATCACCTCATGGCAGCAGGGTGCTGGAGTTTTGCATGATGTTATTTTTTAGGTGGTAGTAATTT TTTTTAGTAGTAGGCACCGCTATCTTATCATATTTCTTGGTTGGTTAGCTTCTGGAAGGTTTTTACATTCTTTGGGGTCT AATTAATTTGGCATATCAAAGCATTTTTATGTGTATATATGATTTTTTGGTCTCCCATAGCATAGCAAAGAATGTACTTG AATTCATTTTTTATTGAAAAAAAACCTGCAATTATTTCTTTCATGTTTTTATTTAATGCCTTGTTCAGCTGCGCTTATCC CACG 

CDS sequence (LotjaGi5g1v0167600.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGACAGAACCAGAGAATCTAGAAGATCATCCATGACCATGGCGTCCTCCACCAATGGATTTCCCACGCGCCGACCTCG AAGTGTTCCTCTCAGAGACTCTTCCGAGGAAGGAGCGGTGGTGCAGGTGAGGGAAGCTTCGAGCAAGAAGGGAAGGAATC GAGAGAAGGATAGGGATTCGTCGAGTCGGAGCAAGAGGAGGAGAGGCTCTCACTCTCACAGGGAAGAAGGCGAACCAAGC ACTGAAGATAGCGTCGGGAATGAACAAGACGACGACGTTCGAGACGCTGGGATTTCTCGGATCCGTTCCTCGTCTTCCGC TTCTGATAAGAGCCACCACCGCCGGAATTTTACGGCGGCGAAGCCTCCCCCGCCCCGGCCGCCGTTCAAGGTAGTCGATG AGGTGATCGGCGTGGTAGTTCCCAGGAAGGCCCGTTCAGCTTCTTTGAAAAGGTTGCATGAGAGCTGGGTCTCCGGGGGC ACCGGCGGTGGGGAGAATCGGACTTTCCGGCAACGGTCGAATTCTCCGGGAAGGCGAATTGTTGAACCGGCCTGGCCTTC TTCTTCGAATGCTTCTGTTAGGAAGAAGATGGTCAGCGCAATTTTTTCAATTTTGTTTTTTTGTGGGATTTGTTATTTTG AAGGACTAAGTTTTGAGATGTTTGTGAATGTGATGTTTAAGAAAGCGATTGAAGCTGAACCAGAGACATTGAAATTGGCT TCATCGGACATCGAGATTGAGATAGCCGAGCTTTTAACCGGTTTGAGGAGTTCAAAGGGCCACGAGTTTTCATCGCAGAA GCTGGAAGCAAGCATGGATCACCACGCCTCAGAGTCTTGTCACTCTAAGGATATTGAGAAGAATAAATTGGAAGAGTTTA AAGATCCGAAGTATTCGTGTGAAGATTTATTAAGAATTCAGGGCCAGGAGCAACCAGCAGATGTGGATTGTCATGAAAAT GGGTCATCAGCGGTTCCAAAAGAGGACATTGGGGAAGACAAAGTGAATCCAGGTGCTGGATTTGGTGGTGCTTATGTAGG TACTGGAAGATTTGATGCCCCTACAAATGAATCACAATCATGCTCCAAGTTGGATGCTGATAAACAGGATTCAGCTTCTA CCAGAATGATGTGTGATGTTCCTGATGCCAATACCAAACGAGTTGGCAAGTTTGAGATAGATCTGATGGCTACTCCTCCT ATGATGCTATCCCTAGAAGGGGATGATTTGTCAAAGAGTCAATTGACTTCAGAAACTAAAGCTTTGGCACCGGATGTGGA AATGAAGAGGATAGACAGTATTGAAGTTGAAGACAAGGCAGAAAGACCAGTTAACCAAGAGAAAACTCCGGAAGAAATTG AAGAGGCGAATATGATCGAGTTTAAGAAAAAATTGAATGTGCTAAAACATGATTTGGTGACGCCAAACAATGACAATGAC ATAATGACAAACAATAAATTGGAAAAGCAGGATAGGAATAAGGAACAGCCAAGTATATCGTCAAATCCCAAAGTGCAGAA AATTGATCATTCTAGTTCAGTGCCTTTGCCAGCTGGTGTATCAGGACGGCCAAGCAATCTCACTTCTATTGGATGCAAGC CACTTTTGCAGAAAGTTGGGGAAACAGATAAAACCAAAGGAGGATCATCGAAATCCCCACAGGGTGTGAATTCTGTTCTC TCTCAACCAAAACGAAAGAGATGTGCAACCCATTATTACATTGCTCGTAACATCTTACACCAGCAGTATACAAAGATGAG CCCCCCTTTACCAGCTGCTATTGGCCCAGGTTCTCTGTGTGGCATTAAACCCAACAATGTCGACTGTGTACCCTCTTCTA GCAAGCAATCTCAAAAACACTTTCCAGGTGTAAACCAAAAAGGTGCACAAGAGAAAGTGTTGGTTGCTACAAGCGATCCT AGTCTTGCTGCATTTAGAAGTTCTAATAATGCCAACCCAATGGATTCAACACACATGCAGCTTGTGCTCCAACAAGGTCC ATATCCTGGCTCAATTGGTACTCTAGTGGGTCCTGCTTTTGTATTTGGTCCGGGCCAGCATCAAGCATCAGTAGCAGCAC CTACTAATCAGGCAGGCGGTGTGAATTTTCCCAGCAGTGCTTCCTCTTATAATAGGTCTCATAGTTCGGTTGCCGGATCT CTTGATACCTCTTCTACTCTGCCTGCAGCTGCTGCTGCAATGAGCTGTAGCTACCCAAAATTTTCAGCCAACGATTCTCC GTATGTGACTATAGTTTCCAATAATGGGTATTCATTCCCCTATTCAACTGCTGTGATCAGAGGTGTAAGTCCTGGTGGGC CTTTCTACTCTTCTCAAATACTCCATCCTCTTCAGTATCCACAACAGCACCCTCACTCAAAAGTACTGGTTCAACCAAGT TATCCTAATGCAAGCATATCAAGTATTTCATCATCTCATAAGCAGTCACAGGGTGCACAAGGTAATGGTAATAATATCAT GACCTCTAAAACAAGGGAACAGCCGTCACAAAAGCAAAGAACTCCCCAGTCTCATCCTCGGAAGCATGAGGTTGTTGTGG GGGGCGAGAACGTACCATCTGTTGCTAATCGAACATCTTATGCACAGAAGAATGTGCATGGGCAGAACTTCACAATTCCA GTTCAGCCTATGAACCTTTCTTTTAAGCCATCTGCAACATCAGATAAAGCTGGTGGCAACAGTGGGATTTTTGCTGACAA GCAGCAGAAACAACAGGCTTCAAAGGGGGGAGTTGAAATTGTACCATCTCAAGCGTTTGCAGTATCGTTTGCTACATTTA ATGGGACCAGTGTTCCTTCAAGCCTTAACTTCTCATCCATGGCACAGAACCCACAGATACTCCACAGTCTGCCTGATATT GCGTACCAAGGATATCCAGCTGCAAGTACACCTTATACTACTCAGCAGAAGACTTGTTCAATTACTGGAGATAAGAGTGG AGGTAATTCCTCCCAACAAGATGATGTTAAGAAGATCACTCATGGAAAGTCACCAACCATTGGGCCAACTACTCTTGTCT TTGACAATTCATCAAAGAATCAAAACTTTGTGATGAGTAGTACGAGTGGAAACTGGCCTAGTGGCGCCATTGCTTCAACT GCGATAATAAACATGCCTTTTTCCGGTAATGCTTCAGGTTCTCAACAGCAGCCGCAGTCGCTTCAGCTTCAGAACATGCA ACAGCCGCGACCTGCCATGTCTACTCGAAAGAAAGCATTATCTGCCACAAAGTTTGCAATGGACACCCCTGTTTTGTCAC AAAGCCTTGCTCAGTGCAAAAGTTCTAATCAAAATTCTCTCTCTAAGACCTTGGGAAGAACCACAGCTTCTCATGTTCAT CACAAGTCTATTATAACATCTAGTGCTCCAACCGTCAAAAGTTTACCTCAGGAGAAAGGAAGAGACTCAAAGGGTCATAA GCAAATTTCTTTTGGGGGAAATTACACCACTTCGTTGCCAACCCAAGGAGCAAAGGCAACAACCACTCAATAA 

Protein sequence (LotjaGi5g1v0167600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MDRTRESRRSSMTMASSTNGFPTRRPRSVPLRDSSEEGAVVQVREASSKKGRNREKDRDSSSRSKRRRGSHSHREEGEPS TEDSVGNEQDDDVRDAGISRIRSSSSASDKSHHRRNFTAAKPPPPRPPFKVVDEVIGVVVPRKARSASLKRLHESWVSGG TGGGENRTFRQRSNSPGRRIVEPAWPSSSNASVRKKMVSAIFSILFFCGICYFEGLSFEMFVNVMFKKAIEAEPETLKLA SSDIEIEIAELLTGLRSSKGHEFSSQKLEASMDHHASESCHSKDIEKNKLEEFKDPKYSCEDLLRIQGQEQPADVDCHEN GSSAVPKEDIGEDKVNPGAGFGGAYVGTGRFDAPTNESQSCSKLDADKQDSASTRMMCDVPDANTKRVGKFEIDLMATPP MMLSLEGDDLSKSQLTSETKALAPDVEMKRIDSIEVEDKAERPVNQEKTPEEIEEANMIEFKKKLNVLKHDLVTPNNDND IMTNNKLEKQDRNKEQPSISSNPKVQKIDHSSSVPLPAGVSGRPSNLTSIGCKPLLQKVGETDKTKGGSSKSPQGVNSVL SQPKRKRCATHYYIARNILHQQYTKMSPPLPAAIGPGSLCGIKPNNVDCVPSSSKQSQKHFPGVNQKGAQEKVLVATSDP SLAAFRSSNNANPMDSTHMQLVLQQGPYPGSIGTLVGPAFVFGPGQHQASVAAPTNQAGGVNFPSSASSYNRSHSSVAGS LDTSSTLPAAAAAMSCSYPKFSANDSPYVTIVSNNGYSFPYSTAVIRGVSPGGPFYSSQILHPLQYPQQHPHSKVLVQPS YPNASISSISSSHKQSQGAQGNGNNIMTSKTREQPSQKQRTPQSHPRKHEVVVGGENVPSVANRTSYAQKNVHGQNFTIP VQPMNLSFKPSATSDKAGGNSGIFADKQQKQQASKGGVEIVPSQAFAVSFATFNGTSVPSSLNFSSMAQNPQILHSLPDI AYQGYPAASTPYTTQQKTCSITGDKSGGNSSQQDDVKKITHGKSPTIGPTTLVFDNSSKNQNFVMSSTSGNWPSGAIAST AIINMPFSGNASGSQQQPQSLQLQNMQQPRPAMSTRKKALSATKFAMDTPVLSQSLAQCKSSNQNSLSKTLGRTTASHVH HKSIITSSAPTVKSLPQEKGRDSKGHKQISFGGNYTTSLPTQGAKATTTQ 

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER 1 1168 1168 0.0
MobiDBLite 1 130 130 -
Phobius 1 196 196 -
PANTHER 1 1168 1168 0.0
MobiDBLite 10 24 15 -
MobiDBLite 47 64 18 -
MobiDBLite 155 186 32 -
MobiDBLite 161 175 15 -
Phobius 197 218 22 -
TMHMM 200 222 23 -
Phobius 219 1170 952 -
MobiDBLite 473 562 90 -
MobiDBLite 518 532 15 -
MobiDBLite 546 562 17 -
MobiDBLite 804 852 49 -
MobiDBLite 804 841 38 -
MobiDBLite 1113 1134 22 -
MobiDBLite 1113 1170 58 -
MobiDBLite 1149 1170 22 -

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Biological process Regulation of circadian rhythm Any process that modulates the frequency, rate or extent of a circadian rhythm. A circadian rhythm is a biological process in an organism that recurs with a regularity of approximately 24 hours.

Expression data

Expression pattern

Expression pattern of LotjaGi5g1v0167600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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