Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0799300 |
| Transcript ID | LotjaGi1g1v0799300.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pumilio like 23; TAIR: AT1G72320.1 pumilio 23; Swiss-Prot: sp|Q9C552|PUM23_ARATH Pumilio homolog 23; TrEMBL-Plants: tr|A0A0L9TG56|A0A0L9TG56_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0799300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:136966945..136973255) extracted from Lotus japonicus Gifu genome v1.2.
TTTTGGGCAAAAAGAAAACAGAAAAGGGTTTCGAATTGGAGTGTGAATACTGAATAGGGTTTTAATCGCTTGATAGTAAA CTATACGCGTTTCATTCCATTCCATTCCATTCCGGCCACCACCGAGTGCCGCAGTGAGAGATAGGGTTTGTTGCTTTGAC TCGGTTATGGTTTCCGTTGGTTCGAAAGCAATGGGCCACCACGTTCACGACTGTGAATCCCACAGACGTAACAAGAAGAA GCAGCACCAGCACCAGCACCAGCAGCACCACCCAAACAAAGGTGGCGGTTCTTCCTTCCATTCCAACAAACGCACCTTCA CTCCCGCATCTCGTGTTAGGTATTCATTCATTCTTCTTCTCAACCTCATACTCCTTTCCCTTCAACCTCGCTCAGAATCT TAGCTTATCATTATTATTATGTCCTTGATTGATTGCAGGAAACAGATTGACCCTGAAACAACTACCTACTTCTCAGAAAT CGCTAATCGACTTGAAAGTGAAGAGGTTGAATTGGAGGAACGCTCACTTATATGTGCTAATGCCCTCGAAGAAACCAGAG GAAAAGAATTTGAAATTGCTACTGATTATATTCTAAGCCACACTCTTGAAACCATCCTCCAAGGCTCTGATGTAGACAGC CTCTGTGCCTTCCTCAAGACTTGTGCCAACGACTTCCCCTCTATTGCCACGGATCAATCTGGTTCCCATGTAGCCCAGAC CGCCATTAACTCTCTAGCTCTTCATCTTCAAGACCCTCTCGTTGAGGATGCTTTAACCATCATATGCAAGGTAGGTCTCT TGCTTTTCTAATTCAAACATCGCATTGCTTCAAATAATTTTTTATTGACTCATATCAGCTTGTTGTTATTATGCTTTAGA TGTAAATTCTTATATGCATACTTGTCATTCTGCAGGTGATTGCAGCTAATTCTGTTGATGTAATGTGTAACTGTTACGGT TCTCACGTGCTTCGAAGTCTTCTTTGCCTTTGTAAAGGAGTGCCATTGGATAAGACTGGATACTATATGTCAAAATCAAC AACAGCTCTAGCTGACCGCTTCAATTTCAAAGACTTTCCTTCAAAGAAAGATGATGCAGCAGATTTTCAGTCTGGGTATC CAAATTTACTGAGATCACTTGTTTCAGAGATGTTAAAGCAAGCTAGAAAATGCATCAAGGCCTTGCAAGTTGACCAATTC AGCAGCTTGGTTTTTCAGGCATGCTTTAATGTTCTTTTTTGGCTGATATTGAGGAGCATGTATGATGTTTTCTATTGTTT GAGCCTTTAGGTTCTGATAATCCATAGTTCCTTAAATGGGATGATAACATTTTATATGGTGCCATGATGGAGATACTGTT AGTTTTGGTTTCTCTTTGATTTTTGTCATTTAACGAGATTTTTTCCAATTAATGGCAGACTACTCTAAGGGTGCTTGCAG GCAATGATGAAGAGTTGCTACATGTGATTCCTGTCATTCTTGGATGCAAAAATCAGAATAATGCAGAGGGAAATTTTATA GAAACTACAGTTGTGCCGCAGCTCTTGAGTTTGTTCAAAGAAGCTGAATTTAGCCATCTAATGGAGGTGAGCAACCTATA GTGAGGGAAAACTGCCAATAATTACCTAGATTAGTACAAGAGCTTGTGAATAATACAAAGAAATTTAATAGAAACTACAT GTAATTACTAATTCTTATTTTTTTGATTTTTTCAAACAAAGTTTCATATATTCCTTTCGAACTGTCTATAGTACATGAGA ACTTTTTCTTTAGACTTTCAGTATAAAAGCAAATTACCATTGTATATTTTCAAACTAGCCCTTCCACATGGATAATCTCA AACAAGGTTTGATATTCAAGTATCAAATTGTGTATTATTGATGAGATTTGTTAGTCCCTAAATATCTCCTGGCGGACAGT GGTCTGATAAGTGACAATTATTTATGTTATGCTCATAAAGTGTTTTGGGATGCTTCATTCAAACTTGTTTGATGTCTATT TTCATCTACCATTACATACCAAACAGTTACATGCTTACACATTTCTTTACGGAGGCATAAATAAATTATTTTTCTAGAGT GATTTTGATGTAACCAAAATTTCTAAATGTCTTGCAGGTTGTTTTGGAAGTATCTCCCAAGGCCTTGTTCAATGAATTGT TCACAAAAGTATTCAGGAATTCCTTGTTTGAGTTATCATCTCATCAACATGGGAACTTTGTTGTTCAAGCATTGATTTCC CATGCAAACAATCAAGATCTGGTATTATACCTAGTTGTGTTTTTGTCTAAAGATGATGACATTTGCTTTACGTTGATCAT TGACATTTTTCACATGTTGTTAGGCACTGATTAATTTTTTCTTCTGTATTGGTTACATGCTATTGCATGCAATACATTTC TCTTTAGCATATTTTTTTTTTGTGATGCCTATTTATGCTATAATTTTCTCTTTGTTAAATGTTTTCCTCATGTTTGTTTA AACTTTTAATCGTTTGATAGATGGAGTTGATCTATGAAGAACTCGCTCCAAATATGGAGGGTCTTTTCCAAATGGGAAGG TCAGGAGTGGTTGCTTCACTTATTGCTGCCTGTGAAAGGCTTCATGTTAATGAACACAAGGTTTGCACTTCAGTTGCAGT ATGTCTGATTAGTGGGTTCCTATATACTTATCTGTTTATGATTCTAGACTGATTTATTGCTTCTAATAACCAACTATAAA TCTACATTGGTTGCATCAGAAATTGAAATGTAAATGGCATTATTTACGTTTGTGCTGAAGTTATTATACTTCTTAATTTT GTTTCTCATCTTTGTGAAAACTTAATGGTCTTTCTGTTACTTTGTGCAGTGCTGTGAAGTCCTTGCAAAAACAGTGTGTT TAGCAGATGATTCTCCAAAGTGGATTGTCCCAAGACTACTATTTCTTGATAGTTATTTCACCTGTGAAGATAAATCCAAT TGGAGCTGGCGAAGTGGCGCTAGAATGAATGTTATGGGCTCTCTTATCCTGCAAGCAATATTCCGGTTTAAAAGCGTAAG CAACTTTCTTGAAATAGATGCTTTCTTTTGGTTTTCAATTGAAAAGGGTAGGGGGGATGCACACATGTGAGTGCTCCCAA GGTGTAACCATATGAACCATTGGATTCCCAACTTGAGTGCATTTTTATGTGAAACTGGTTTTTCTTGGGCTGGAAGGCGT TGCTACGTAGAATAAATATCTCATTGTTGGCTTAAGTCCTTTCCTAGAGACCTTGCATGAGGCTTAGAGATGGAAGCTTC ATAGAAGAAGCAAGCTGGTCTTGAAACATTTCTAAGACTAGGTATAAGACTTGCATCCCCAACTACCACCCCAGAAATTT GGAGCTGTGATTATTATGATTTGTTATTCTTACTGTGGTAGTTAATGAAAAACACGGCTATAAATCACTTGTCTTTGCTA TAGTATTAAAGCAAGTGGCGCTTTTACTTTCTCTGTAGGAAGGTATCAGGTTTATCTCACGTATGCATTAAAAACTTGTA TTCATTTTCTGTATTCTGTTGTCATTGATTTTATTTTCACAGGAATATATACAACCTTACATCACCAGTATAACCTCCAT GGAAGCAACTCATGTGCTTGAAGCAGTGAGAGATGCCAAAGGATCACATGTTATTGAGGCTTTTCTGTGTTCAGGTGCTT CTGGAAAGCAGAAGCGCAGATTAGTTACAAAGTATGTCTTTCAACTATATTTCTTGTGTTTTTATTATTCTCTGGGAAAT TCTTGTTTATGCTAAAGGGATTAATGCGATAAATATGATATGACGAATTTGTTTTCTATTTCTATATTAAACGTCAAAAT CTTCATCTCTATGGTTTGTATTTTAGTATCATAGTTACATGCACATTAATGAGAGTAATAATATGGTAATCTACGTTTTA TTTAAAGTCACAGTTCATTCTTTGTGGTTTGGGTTCTCTGGGTATTCTTTCTTTAGCTAGCATTGAATGGACAGAAATAA CTATTTAAATTCTTTCCTAAATGGAGAGCTTCAAATTCCAAAATTAGAAGTTGTGGATTATAGTTACCAAAGCGTAAGTT TTGGAGGCTCCCATTGTTGTTAGCTATACTTTATAGACTTAGCAGGGCGATAATATCAAAATAGCAAGAAATTTGCATGT GATGTTCTAATGTAATGCAATTACACTATTGATTATCTTTTTTACATTTTTGTCTTTCATAATTTATTATGTAGACTACA AAGTCATTTTGGAGAGGTAGCACTCAACTCATCAGGTGCTTTTACCATTGAAAAATGCTTCACTTCCTGTAATCTGTCAC TAAGAGAGGCTATAGTGTCTGAGATATTGGCTGTCCGAAGTGAGCTTTCCAAGACAAAGCAGGGCTCTTACCTATTAAGG AGACTAGATGTTGACGGGTATGCTGTTGGCTAATTACTGTATTGTCGACTGTCCTGATTTATTACTTTCCAATTCGATTG AGAATTTTTTTTAACCACTTGATCTCTAAATAAAGAGTACATAGATCTATTTTCGTAGAAACAGAAGCATATTACAAGGC ACAAGCTTTTTGTGTTGGTACCTTAATGCCTATGACTATTGCATTTTTGGATAACCGTTGGAAGTGTCCAAACGAATGTG ATTATGAAAATCCATATGTTTGGTTACTTTGAGTTCAACTAAAAACATCCAAGTATATTTTACTTCTTCAAGTTTAAACT CAATTTTAACCAAAATCAAAATAATTCAAAATCAATTTTGCTTAGCCTAACATATGATTGAATGTTGTAGTACTAAATGT TTGTTTTATTTTGTTCAAGCTATTCTTCACTAATGATGCCTTTGCTTTATTGCCACAGATATGTTACAAGTCCTGATCAT TGGAGGTCAAAACAAACATCCAAAGAATCTACTTACAAAGATTTCTATGCCACGTTTGGCTCCAATGATACAAAGTCGTC AAAAACTGATGGCTTTCTTTCTGACACTTTTAGTAAATCAATTCCAAAAACTGTAAAGGAAATGAGAAAAGAAATTGACC AATCCCTAGGTCCTGCTGCATCATTTCTGAGCACAGATGGGTTTAAGAGAAACCCAAAAAAAGAAAAGCAGAAAAATAAG AAAAATGCTCAAATTGGTGGCGATGATGATAACTCCAGTAGGAAAAGTAAAAGGTCTAGAAGGGTTGAAAGTGGAGATGA TATTACCTCTAATCCGGCGTCCAAGAAGACTCTAAAGAAACGGCAAAGAGATGGTGATGTATCCGAGGTTTTTGTGAAGA AATTGAAGGCATCAGATAAGTAGAGTGTAAGACAATTTTTCAGTTTTAACTAAAAGATGACATTAAGCATGGTCAATTGT TTCCTCTTTGCTAGTGATTTTATATCATTTACCACATGTAGCACAAATATGTAACTGGAACAAGAAATCACATTGAATAA GTTATAAATATTTTCCTGCTATGAATCTCCTCCAAACATAGTATTTTGTTCTGTCTAATATATCATCAGTCTTTTCTACA AATCTGGAGATCGATCCCCTTATTTTATAATACCAATATTACATACAGATTGAAGTATATCACAGAACTCAACAAGCTTA GTTAGCAAAGCTGGTAAATACTATGTAAGTTGAAGTACTAACAGTCTTTGGCACTTGTCTGTTAGAAGGTGAAATACCAG TGTATACTGACATCCTTATGCTTGTTTAGAAGAGGCAATAAAAATGAAATGAAAGAAATAAGAAAAGGAAAGAGTGGGGT AATTCGTTCTATCTTTCTCAGCCGTACGCTGGAGGATTGAACCTGCGGTAGAAATGTAATTTTCTTTTTGTCAATCATTA GCAGCATATAATGGAAAGGCTTGAGAGTTGAAACTGTTAGTAGTAACAGTTACTTGTTTTGTGTGGGATTTGATTTGCTT GGAGGTATCCTTCGGAAACTTGAATCTACCTTGGAAAATTTCTTCCTATATGAGTGGAAATCTTTGAGAGCTTGAGCAGA TGAAGTCTTGCTTTGCGGCAAAGAGCGCACTTGTATGGATGGGCGAGCCTCGACTTTGGCACTAGTAGACCAGGTTGACA ATAACAGAGACAGTGTAAGAGAAAACGCAGCCAATGCTATGGACCAGCTCTTCATGGTAGTGGAGGATCTTGGTTCTTAC GGTTCTGAGGCCTGTTGCATTGTGTTAGAGCTAAAGGTACTTACAATGATGTTATGAGGGTGAACACTGAAGTTGATTCA TTCTTTATTAGTGTATGAAACTGAAATGCTAGTACTCCAAGGAGTAAAATTTTAATGGGGATCTGATCCCA
CDS sequence (LotjaGi1g1v0799300.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTTTCCGTTGGTTCGAAAGCAATGGGCCACCACGTTCACGACTGTGAATCCCACAGACGTAACAAGAAGAAGCAGCA CCAGCACCAGCACCAGCAGCACCACCCAAACAAAGGTGGCGGTTCTTCCTTCCATTCCAACAAACGCACCTTCACTCCCG CATCTCGTGTTAGGAAACAGATTGACCCTGAAACAACTACCTACTTCTCAGAAATCGCTAATCGACTTGAAAGTGAAGAG GTTGAATTGGAGGAACGCTCACTTATATGTGCTAATGCCCTCGAAGAAACCAGAGGAAAAGAATTTGAAATTGCTACTGA TTATATTCTAAGCCACACTCTTGAAACCATCCTCCAAGGCTCTGATGTAGACAGCCTCTGTGCCTTCCTCAAGACTTGTG CCAACGACTTCCCCTCTATTGCCACGGATCAATCTGGTTCCCATGTAGCCCAGACCGCCATTAACTCTCTAGCTCTTCAT CTTCAAGACCCTCTCGTTGAGGATGCTTTAACCATCATATGCAAGGTGATTGCAGCTAATTCTGTTGATGTAATGTGTAA CTGTTACGGTTCTCACGTGCTTCGAAGTCTTCTTTGCCTTTGTAAAGGAGTGCCATTGGATAAGACTGGATACTATATGT CAAAATCAACAACAGCTCTAGCTGACCGCTTCAATTTCAAAGACTTTCCTTCAAAGAAAGATGATGCAGCAGATTTTCAG TCTGGGTATCCAAATTTACTGAGATCACTTGTTTCAGAGATGTTAAAGCAAGCTAGAAAATGCATCAAGGCCTTGCAAGT TGACCAATTCAGCAGCTTGGTTTTTCAGACTACTCTAAGGGTGCTTGCAGGCAATGATGAAGAGTTGCTACATGTGATTC CTGTCATTCTTGGATGCAAAAATCAGAATAATGCAGAGGGAAATTTTATAGAAACTACAGTTGTGCCGCAGCTCTTGAGT TTGTTCAAAGAAGCTGAATTTAGCCATCTAATGGAGGTTGTTTTGGAAGTATCTCCCAAGGCCTTGTTCAATGAATTGTT CACAAAAGTATTCAGGAATTCCTTGTTTGAGTTATCATCTCATCAACATGGGAACTTTGTTGTTCAAGCATTGATTTCCC ATGCAAACAATCAAGATCTGATGGAGTTGATCTATGAAGAACTCGCTCCAAATATGGAGGGTCTTTTCCAAATGGGAAGG TCAGGAGTGGTTGCTTCACTTATTGCTGCCTGTGAAAGGCTTCATGTTAATGAACACAAGTGCTGTGAAGTCCTTGCAAA AACAGTGTGTTTAGCAGATGATTCTCCAAAGTGGATTGTCCCAAGACTACTATTTCTTGATAGTTATTTCACCTGTGAAG ATAAATCCAATTGGAGCTGGCGAAGTGGCGCTAGAATGAATGTTATGGGCTCTCTTATCCTGCAAGCAATATTCCGGTTT AAAAGCGAATATATACAACCTTACATCACCAGTATAACCTCCATGGAAGCAACTCATGTGCTTGAAGCAGTGAGAGATGC CAAAGGATCACATGTTATTGAGGCTTTTCTGTGTTCAGGTGCTTCTGGAAAGCAGAAGCGCAGATTAGTTACAAAACTAC AAAGTCATTTTGGAGAGGTAGCACTCAACTCATCAGGTGCTTTTACCATTGAAAAATGCTTCACTTCCTGTAATCTGTCA CTAAGAGAGGCTATAGTGTCTGAGATATTGGCTGTCCGAAGTGAGCTTTCCAAGACAAAGCAGGGCTCTTACCTATTAAG GAGACTAGATGTTGACGGATATGTTACAAGTCCTGATCATTGGAGGTCAAAACAAACATCCAAAGAATCTACTTACAAAG ATTTCTATGCCACGTTTGGCTCCAATGATACAAAGTCGTCAAAAACTGATGGCTTTCTTTCTGACACTTTTAGTAAATCA ATTCCAAAAACTGTAAAGGAAATGAGAAAAGAAATTGACCAATCCCTAGGTCCTGCTGCATCATTTCTGAGCACAGATGG GTTTAAGAGAAACCCAAAAAAAGAAAAGCAGAAAAATAAGAAAAATGCTCAAATTGGTGGCGATGATGATAACTCCAGTA GGAAAAGTAAAAGGTCTAGAAGGGTTGAAAGTGGAGATGATATTACCTCTAATCCGGCGTCCAAGAAGACTCTAAAGAAA CGGCAAAGAGATGGTGATGTATCCGAGGTTTTTGTGAAGAAATTGAAGGCATCAGATAAGTAG
Protein sequence (LotjaGi1g1v0799300.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVSVGSKAMGHHVHDCESHRRNKKKQHQHQHQQHHPNKGGGSSFHSNKRTFTPASRVRKQIDPETTTYFSEIANRLESEE VELEERSLICANALEETRGKEFEIATDYILSHTLETILQGSDVDSLCAFLKTCANDFPSIATDQSGSHVAQTAINSLALH LQDPLVEDALTIICKVIAANSVDVMCNCYGSHVLRSLLCLCKGVPLDKTGYYMSKSTTALADRFNFKDFPSKKDDAADFQ SGYPNLLRSLVSEMLKQARKCIKALQVDQFSSLVFQTTLRVLAGNDEELLHVIPVILGCKNQNNAEGNFIETTVVPQLLS LFKEAEFSHLMEVVLEVSPKALFNELFTKVFRNSLFELSSHQHGNFVVQALISHANNQDLMELIYEELAPNMEGLFQMGR SGVVASLIAACERLHVNEHKCCEVLAKTVCLADDSPKWIVPRLLFLDSYFTCEDKSNWSWRSGARMNVMGSLILQAIFRF KSEYIQPYITSITSMEATHVLEAVRDAKGSHVIEAFLCSGASGKQKRRLVTKLQSHFGEVALNSSGAFTIEKCFTSCNLS LREAIVSEILAVRSELSKTKQGSYLLRRLDVDGYVTSPDHWRSKQTSKESTYKDFYATFGSNDTKSSKTDGFLSDTFSKS IPKTVKEMRKEIDQSLGPAASFLSTDGFKRNPKKEKQKNKKNAQIGGDDDNSSRKSKRSRRVESGDDITSNPASKKTLKK RQRDGDVSEVFVKKLKASDK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 63 | 63 | - | – | |
| MobiDBLite | 17 | 34 | 18 | - | – | |
| PANTHER | 20 | 682 | 663 | 1.1E-222 | ||
| MobiDBLite | 35 | 63 | 29 | - | – | |
| Gene3D | 61 | 414 | 354 | 5.9E-34 | ||
| SUPERFAMILY | 80 | 591 | 512 | 1.87E-46 | ||
| SMART | 96 | 131 | 36 | 440.0 | ||
| ProSiteProfiles | 128 | 167 | 40 | 7.077 | ||
| SMART | 132 | 167 | 36 | 1.0 | ||
| ProSiteProfiles | 175 | 198 | 24 | 4.534 | ||
| ProSiteProfiles | 253 | 292 | 40 | 4.884 | ||
| SMART | 313 | 348 | 36 | 93.0 | ||
| ProSiteProfiles | 313 | 348 | 36 | 4.814 | ||
| ProSiteProfiles | 349 | 386 | 38 | 9.807 | ||
| SMART | 350 | 385 | 36 | 0.0017 | ||
| Pfam | 352 | 381 | 30 | 8.8E-6 | ||
| Gene3D | 464 | 610 | 147 | 1.6E-14 | ||
| ProSiteProfiles | 494 | 531 | 38 | 7.054 | ||
| SMART | 495 | 531 | 37 | 330.0 | ||
| ProSiteProfiles | 532 | 567 | 36 | 7.311 | ||
| SMART | 532 | 567 | 36 | 27.0 | ||
| MobiDBLite | 661 | 727 | 67 | - | – | |
| MobiDBLite | 668 | 705 | 38 | - | – | |
| MobiDBLite | 713 | 727 | 15 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | RNA binding | Interacting selectively and non-covalently with an RNA molecule or a portion thereof. |
Expression pattern of LotjaGi1g1v0799300.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…