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IPR040503

Source: InterPro

Description

IPR040503 is a tRNA uridine(34) hydroxylase, N-terminal.

<p>This domain is found at the N terminus of tRNA uridine(34) hydroxylase TrhO from bacteria. TrhO (also known as YceA in E. coli) catalyzes oxygen-dependent 5-hydroxyuridine (ho5U) modification at position 34 in tRNAs, the first step in 5-carboxymethoxyuridine (cmo5U) biosynthesis [[cite:PUB00094522]]. This domain can also be found in rhodanese-like domain-containing proteins from eukaryotes.</p>

This description is obtained from EB-eye REST.

Associated GO terms

Unable to find any GO terms for the transcript with the identifier.

Associated Lotus transcripts 3

Transcript Name Description Predicted domains Domain count
LotjaGi1g1v0131400.1
– UPF0176 protein; TAIR: AT2G40760.1 Rhodanese/Cell cycle control phosphatase superfamily protein; Swiss-Prot: sp|Q1JPN0|STR7_ARATH Rhodanese-like domain-containing protein 7; TrEMBL-Plants: tr|G7KD73|G7KD73_MEDTR Rhodanese-related sulfurtransferase; Found in the gene: LotjaGi1g1v0131400
Domains
17
LotjaGi4g1v0466200.1
– UPF0176 protein; TAIR: AT1G17850.2 Rhodanese/Cell cycle control phosphatase superfamily protein; Swiss-Prot: sp|F4I933|STR8_ARATH Rhodanese-like domain-containing protein 8, chloroplastic; TrEMBL-Plants: tr|I3T8Y5|I3T8Y5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0466200
Domains
16
LotjaGi5g1v0231600.1
– UPF0176 protein; TAIR: AT1G09280.1 rhodanese-like domain protein; Swiss-Prot: sp|Q94AC1|STR6_ARATH Rhodanese-like domain-containing protein 6; TrEMBL-Plants: tr|A0A072VNW1|A0A072VNW1_MEDTR Phospholipase/carboxylesterase family protein; Found in the gene: LotjaGi5g1v0231600
Domains
19

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain Source Observations Saturation (%)
cd01518 CDD 1 33.33