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Ribosomal protein L11, RNA binding domain
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Structural constituent of ribosome | The action of a molecule that contributes to the structural integrity of the ribosome. | ||
| Cellular component | Ribosome | An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins. | ||
| Biological process | Translation | The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome. |
| Transcript | Name | Description | Predicted domains | Domain count |
|---|---|---|---|---|
| – | PREDICTED: 60S ribosomal protein L12-like [Cicer arietinum] gi|502121944|ref|XP_004497502.1| | 17 | ||
| – | PREDICTED: 60S ribosomal protein L12-like [Glycine max] gi|356548248|ref|XP_003542515.1| | 17 | ||
| – | Plastid ribosomal protein l11 [Theobroma cacao] gi|508776569|gb|EOY23825.1| | 25 | ||
| – | PREDICTED: 54S ribosomal protein L19, mitochondrial-like [Cicer arietinum] gi|502149042|ref|XP_004507370.1| | 14 | ||
| – | 50S ribosomal protein L11; TAIR: AT2G37190.1 Ribosomal protein L11 family protein; Swiss-Prot: sp|O50003|RL12_PRUAR 60S ribosomal protein L12; TrEMBL-Plants: tr|V4UR62|V4UR62_9ROSI Uncharacterized protein; Found in the gene: LotjaGi2g1v0359600 | 19 | ||
| – | 50S ribosomal protein L11; TAIR: AT2G37190.1 Ribosomal protein L11 family protein; Swiss-Prot: sp|O50003|RL12_PRUAR 60S ribosomal protein L12; TrEMBL-Plants: tr|M0REW8|M0REW8_MUSAM Uncharacterized protein; Found in the gene: LotjaGi2g1v0359600 | 13 | ||
| – | 50S ribosomal protein L11; TAIR: AT2G37190.1 Ribosomal protein L11 family protein; Swiss-Prot: sp|O50003|RL12_PRUAR 60S ribosomal protein L12; TrEMBL-Plants: tr|V4UR62|V4UR62_9ROSI Uncharacterized protein; Found in the gene: LotjaGi2g1v0359600 | 19 | ||
| – | 50S ribosomal protein L11; TAIR: AT2G37190.1 Ribosomal protein L11 family protein; Swiss-Prot: sp|O50003|RL12_PRUAR 60S ribosomal protein L12; TrEMBL-Plants: tr|V4UR62|V4UR62_9ROSI Uncharacterized protein; Found in the gene: LotjaGi2g1v0359600 | 19 | ||
| – | 50S ribosomal protein L11; TAIR: AT2G37190.1 Ribosomal protein L11 family protein; Swiss-Prot: sp|O50003|RL12_PRUAR 60S ribosomal protein L12; TrEMBL-Plants: tr|A5C9G0|A5C9G0_VITVI Putative uncharacterized protein; Found in the gene: LotjaGi5g1v0078100 | 18 | ||
| – | 50S ribosomal protein L11; TAIR: AT2G37190.1 Ribosomal protein L11 family protein; Swiss-Prot: sp|O50003|RL12_PRUAR 60S ribosomal protein L12; TrEMBL-Plants: tr|K7LQG0|K7LQG0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0078100 | 19 | ||
| – | 50S ribosomal protein L11; TAIR: AT2G37190.1 Ribosomal protein L11 family protein; Swiss-Prot: sp|O50003|RL12_PRUAR 60S ribosomal protein L12; TrEMBL-Plants: tr|M0REW8|M0REW8_MUSAM Uncharacterized protein; Found in the gene: LotjaGi5g1v0078100 | 13 | ||
| – | 50S ribosomal protein L11; TAIR: AT2G37190.1 Ribosomal protein L11 family protein; Swiss-Prot: sp|O50003|RL12_PRUAR 60S ribosomal protein L12; TrEMBL-Plants: tr|K7LQG0|K7LQG0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0078100 | 19 | ||
| – | 50S ribosomal protein L11; TAIR: AT1G32990.1 plastid ribosomal protein l11; Swiss-Prot: sp|Q9MAP3|RK11_ARATH 50S ribosomal protein L11, chloroplastic; TrEMBL-Plants: tr|I3S932|I3S932_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0032300 | 26 | ||
| – | 50S ribosomal protein L11; TAIR: AT4G35490.1 mitochondrial ribosomal protein L11; Swiss-Prot: sp|Q9Y3B7|RM11_HUMAN 39S ribosomal protein L11, mitochondrial; TrEMBL-Plants: tr|T2DNZ2|T2DNZ2_PHAVU 60S ribosomal protein L19; Found in the gene: LotjaGi6g1v0195600 | 23 |
A list of co-occurring predicted domains within the L. japonicus gene space:
| Predicted domain | Source | Observations | Saturation (%) |
|---|---|---|---|
| cd00349 | CDD | 1 | 7.14 |