Domain Predictions — View

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PF01042

Source: Pfam

Description

Endoribonuclease L-PSP

Associated GO terms

Unable to find any GO terms for the transcript with the identifier.

Associated Lotus transcripts 7

Transcript	Name	Description	Predicted domains	Domain count
Lj1g3v3976130.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: meiotically up-regulated gene 71 protein-like [Glycine max] gi\|356571763\|ref\|XP_003554042.1\|	Domains G3DSA:3.30.1330.40 G3DSA:3.40.50.620 G3DSA:3.90.1490.10 IPR002761 IPR006175 IPR013813 IPR014729 IPR030662 PF01042 PF01902 PTHR12196 SSF52402 SSF55298 TIGR00290 cd01994 cd06156	16
Lj2g3v3164060.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Ribonuclease UK114 [Medicago truncatula] gi\|357494505\|ref\|XP_003617541.1\|	Domains G3DSA:3.30.1330.40 IPR006056 IPR006175 IPR013813 IPR019897 NON_CYTOPLASMIC_DOMAIN PF01042 PS01094 PTHR11803 PTHR11803:SF13 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION SSF55298 TIGR00004 cd00448	17
Lj6g3v0885350.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: ribonuclease UK114-like [Glycine max] gi\|356567350\|ref\|XP_003551884.1\|	Domains G3DSA:3.30.1330.40 IPR006056 IPR006175 IPR013813 IPR019897 PF01042 PS01094 PTHR11803 PTHR11803:SF13 SSF55298 TIGR00004 cd00448	12
LotjaGi1g1v0029100.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Endoribonuclease L-PSP family protein; TAIR: AT3G20390.1 endoribonuclease L-PSP family protein; Swiss-Prot: sp\|Q94JQ4\|RIDA_ARATH Reactive Intermediate Deaminase A, chloroplastic; TrEMBL-Plants: tr\|I3SSA5\|I3SSA5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0029100	Domains G3DSA:3.30.1330.40 IPR006056 IPR006175 IPR019897 IPR035959 PF01042 PS01094 PTHR11803 PTHR11803:SF45 SSF55298 TIGR00004 cd00448	12
LotjaGi1g1v0647100.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Diphthine--ammonia ligase; TAIR: AT3G04480.1 endoribonuclease; Swiss-Prot: sp\|Q9USQ7\|DPH6_SCHPO Diphthine--ammonia ligase; TrEMBL-Plants: tr\|I1N8C3\|I1N8C3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0647100	Domains G3DSA:3.30.1330.40 G3DSA:3.40.50.620 G3DSA:3.90.1490.10 IPR002761 IPR006175 IPR014729 IPR030662 IPR035959 PF01042 PF01902 PTHR12196 SSF52402 SSF55298 TIGR00290 cd01994 cd06156	16
LotjaGi1g1v0647100.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Diphthine--ammonia ligase; TAIR: AT3G04480.1 endoribonuclease; Swiss-Prot: sp\|Q9USQ7\|DPH6_SCHPO Diphthine--ammonia ligase; TrEMBL-Plants: tr\|I1N8C3\|I1N8C3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0647100	Domains G3DSA:3.30.1330.40 G3DSA:3.40.50.620 G3DSA:3.90.1490.10 IPR002761 IPR006175 IPR014729 IPR030662 IPR035959 PF01042 PF01902 PTHR12196 SSF52402 SSF55298 TIGR00290 cd01994 cd06156	16
LotjaGi6g1v0160200.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Endoribonuclease L-PSP family protein; TAIR: AT3G20390.1 endoribonuclease L-PSP family protein; Swiss-Prot: sp\|Q94JQ4\|RIDA_ARATH Reactive Intermediate Deaminase A, chloroplastic; TrEMBL-Plants: tr\|I3SWH4\|I3SWH4_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0160200	Domains CYTOPLASMIC_DOMAIN G3DSA:3.30.1330.40 IPR006056 IPR006175 IPR019897 IPR035959 NON_CYTOPLASMIC_DOMAIN PF01042 PS01094 PTHR11803 PTHR11803:SF45 SSF55298 TIGR00004 TRANSMEMBRANE cd00448	15

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain	Source	Observations	Saturation (%)
cd00448	CDD	1	14.29