Domain Predictions — View

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PF02617

Source: Pfam

Description

ATP-dependent Clp protease adaptor protein ClpS

Associated GO terms

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0030163 View details of GO:0030163 AmiGO InterPro QuickGO	Biological process	Protein catabolic process	The chemical reactions and pathways resulting in the breakdown of a protein by the destruction of the native, active configuration, with or without the hydrolysis of peptide bonds.	Subterm of GO:0009057 GO:0019538 GO:1901565

Associated Lotus transcripts 4

Transcript	Name	Description	Predicted domains	Domain count
Lj0g3v0247139.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	ATP-dependent Clp protease adapter protein clpS [Medicago truncatula] gi\|357488429\|ref\|XP_003614502.1\|	Domains G3DSA:3.30.1390.10 IPR003769 IPR014719 PF02617 PTHR33473 PTHR33473:SF4 SSF54736	7
Lj2g3v0764330.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: ATP-dependent Clp protease adapter protein ClpS-like [Glycine max] gi\|356531226\|ref\|XP_003534179.1\|	Domains G3DSA:3.30.1390.10 IPR003769 IPR014719 NON_CYTOPLASMIC_DOMAIN PF02617 PTHR33473 PTHR33473:SF2 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION SSF54736	12
Lj2g3v1166710.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	ATP-dependent Clp protease adapter protein clpS [Medicago truncatula] gi\|357488429\|ref\|XP_003614502.1\|	Domains G3DSA:3.30.1390.10 IPR003769 IPR014719 PF02617 PTHR33473 PTHR33473:SF2 SSF54736	7
LotjaGi2g1v0211800.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	ATP-dependent Clp protease adapter protein clpS; TAIR: AT1G68660.1 Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein; Swiss-Prot: sp\|Q9SX29\|CLPS1_ARATH ATP-dependent Clp protease adapter protein CLPS1, chloroplastic; TrEMBL-Plants: tr\|I3SN73\|I3SN73_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0211800	Domains G3DSA:3.30.1390.10 IPR003769 IPR014719 NON_CYTOPLASMIC_DOMAIN PF02617 PTHR33473 PTHR33473:SF14 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION SSF54736	12

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain	Source	Observations	Saturation (%)
SSF54736	SUPERFAMILY	1	25.00