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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0211800 |
| Transcript ID | LotjaGi2g1v0211800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | ATP-dependent Clp protease adapter protein clpS; TAIR: AT1G68660.1 Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein; Swiss-Prot: sp|Q9SX29|CLPS1_ARATH ATP-dependent Clp protease adapter protein CLPS1, chloroplastic; TrEMBL-Plants: tr|I3SN73|I3SN73_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0211800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:65966925..65969349) extracted from Lotus japonicus Gifu genome v1.2.
AATCAGTGTCACCCACTCAAGAAATAAAAAAAATCAGTGTGGTAAAGACAAAACAGCACTAGATTATTTCACTCAACTTG GTTAGTTCTAACTGCTTAGTGTCATTCACACAACACAAGCAGCCATGGAAGCTGCATTATGCAGTTCACTTGCTCTTTCA CCCCACCAAGTTTTCAATGCAGCGAATCATGGTACTTGTTGTCTGCACTTATGAGACATTTCAGTTCTAAATTATTTTTT ACATGTGAAATGGTTCATATGTTAATTGCTATGAACTTTGTGGTTGTAGGGGATAAAATGTTTGCTTTCAAATATGGCAA AGATCGGAGTGTTGTAATGACAGTGGCAGCCACTGGAGCAGGGAAAGGTGGAGGGTTGTTGGAGAGGCCAACCATAGAGA CAACATCACCTGGTCGGGAATCTGAATTTGACTTAAGGTAATCAATCATATATAGCATTTGGGGCATAATTCATTCAAAA ATGACCTAATACTATCCATGTCTTGGAAGTGTTTCATATATAATCAAGTTCTGATTATTGGGCTTGTGAAAACTATAATT GTGTTTGTGTCTTGCAAATATAAATCAAAACCGGTGGGCAGGTTCTTTGATTTAGTGTATGTTTGGAAATTCTTATACAA TTGATTATTGAGCTAGTTAGAATCAATTATGGGGAGAAACTTATGCGAGTAGCTTCTGGGTTTCTGAATTGATGTCAACA CTTAATACTAATTTATATTTTGGAATTGGTTCATCTAGATGCCTCAGATGAAGGGTATATTGTCTCTGTTTGGGTTGAAC TTTATTGTATTATTATCCTTTTCTGATGTATTCTTTCATATTCCCTCTTATATATTCATTTTCTCCTCCTTTCGCTTTTT CATCTATCTTCTTGTTTGAATTTGATTTTATTCCTAACCTGATGCCAAGGAAAAGCACTGGTGTTTGTTTCTTTAGTATT TGCATTTGGTTTTCTGTTTCGCCTTCATTTTTACTGTCTAATAATTGTGAAAGACTTTGAATGACAAAACTTAGGCATTA CCATTGAACTACAGACATTAATTTGTCCATAATTTCCTACTGTGCTGCTTTAGGATGTGATGCGCGTGGAGGTTTCTATT ATGGTTTACTTACATATTCCATACCTTTCCTTCAATTGAATTTGAACCGGACTACTAGAGTCATATGTGAAGTTTAGTTT CGTGACCTGAATTTGCTGATTGACAAATTCTAAATGAAACCAATAGCACTCTTTGATTTGCAAGTGAAAGTGATGATATG CCAAGGCGGTTCTTATAGTATATTTACATGTATGCTTATCTTTTGACATATTTGCAAGTTTGCACTCTTTGGATTAGTTT CTTTTTTCTCAGAATGAATTTTGAAATGCAGAAACTACCCACATAAGCTCCTCCCCTGAATTGATTCTGACTTCTGAATC AATTGTACAAATATTTCTTAACGCACCTTTACTCAAGGCTTTGTAATGACTTGTCTTCCAAAGTAGTTGTGGTAACTTTA ACTGATAAGATTACTCTATCCCTGGGTGGTTTAATATAAATGGTACACTGGTTAAGCGATAACTCTTTAACATTTTGCTA GAGATCCACTATATTTGTTTTTGAGATAAACCTGCTTAATTGTCAAAAGAAAGGTGATCAGTTGAGTGGTTTCTTTTATT GTCTTTGGAAAAGAAATGTAATTATGAAGTAGGCAAATCCATTTTTGGGAAACTTATTCCTGTCCCATTTCTTTATATCT CTGTCTCATTATAACATGTTTTAAAGCAAAAGAAAGTGTGCTAAAAACCGTTGATGACATGTTTTCTACCAGGAAATTGC GAAAAACATCCCCACCTTACCGAGTATTGCTGCACAATGACAACTACAACAAGCGTGAATATGTGGTGCAAGTGCTGATG AAGGTGATACCAGGAATGACAGTTGATAATGCGGTTAACATCATGCAGGAGGCACACATTAATGGAATGGCAGTTGTCAT CATCTGTGCTCAAGTCGATGCCGAAGACCACTGCATGCAGTTGAGAGGAAATGGCCTTTTGAGTTCAATTGAGCCTGCAG ATGGTGGGTGTTGAATGATGAATGTTGATTCTCATCAAGATAGAAAGAGACTTTGGTCTAATAGTTTCATTGTATGCTAT TATGCATATTATACACAATCATTAAAGACAGTTTGTATAGAAAAGTAGTAGCTAGGCAAGGAAGAGATAGTGCTAATTAG TACTAATGCAGGACATGAATTGCTACCAATCAGTAGCATCATTTGCTTTAAAGTGTTATACTATAATTAAGTCTCTATGT TTCCACTCTTCACTGAAGCAAGCTTCTCATATCAGCATCAATAGCCAGAACATGCCTTATGAAATTGTTAGTCTAACATA GGAATAATAAATATTGGTAACTTGG
CDS sequence (LotjaGi2g1v0211800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAGCTGCATTATGCAGTTCACTTGCTCTTTCACCCCACCAAGTTTTCAATGCAGCGAATCATGGGGATAAAATGTT TGCTTTCAAATATGGCAAAGATCGGAGTGTTGTAATGACAGTGGCAGCCACTGGAGCAGGGAAAGGTGGAGGGTTGTTGG AGAGGCCAACCATAGAGACAACATCACCTGGTCGGGAATCTGAATTTGACTTAAGGAAATTGCGAAAAACATCCCCACCT TACCGAGTATTGCTGCACAATGACAACTACAACAAGCGTGAATATGTGGTGCAAGTGCTGATGAAGGTGATACCAGGAAT GACAGTTGATAATGCGGTTAACATCATGCAGGAGGCACACATTAATGGAATGGCAGTTGTCATCATCTGTGCTCAAGTCG ATGCCGAAGACCACTGCATGCAGTTGAGAGGAAATGGCCTTTTGAGTTCAATTGAGCCTGCAGATGGTGGGTGTTGA
Protein sequence (LotjaGi2g1v0211800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEAALCSSLALSPHQVFNAANHGDKMFAFKYGKDRSVVMTVAATGAGKGGGLLERPTIETTSPGRESEFDLRKLRKTSPP YRVLLHNDNYNKREYVVQVLMKVIPGMTVDNAVNIMQEAHINGMAVVIICAQVDAEDHCMQLRGNGLLSSIEPADGGC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 19 | 19 | - | – | |
| Phobius | 1 | 2 | 2 | - | – | |
| PANTHER | 1 | 158 | 158 | 1.3E-89 | – | |
| PANTHER | 1 | 158 | 158 | 1.3E-89 | – | |
| Phobius | 3 | 11 | 9 | - | – | |
| Phobius | 12 | 19 | 8 | - | – | |
| Phobius | 20 | 158 | 139 | - | – | |
| Gene3D | 58 | 152 | 95 | 1.7E-17 | ||
| SUPERFAMILY | 75 | 152 | 78 | 1.83E-21 | ||
| Pfam | 77 | 144 | 68 | 7.5E-18 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Protein catabolic process | The chemical reactions and pathways resulting in the breakdown of a protein by the destruction of the native, active configuration, with or without the hydrolysis of peptide bonds. |
Expression pattern of LotjaGi2g1v0211800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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