Domain Predictions — View

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PF04389

Source: Pfam

Description

Peptidase family M28

Associated GO terms

Unable to find any GO terms for the transcript with the identifier.

Associated Lotus transcripts 17

Transcript	Name	Description	Predicted domains	Domain count
Lj0g3v0339149.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: endoplasmic reticulum metallopeptidase 1-like isoform X2 [Cicer arietinum] gi\|502118460\|ref\|XP_004496278.1\|	Domains CYTOPLASMIC_DOMAIN G3DSA:3.40.630.10 IPR007484 NON_CYTOPLASMIC_DOMAIN PF04389 PTHR12147 PTHR12147:SF6 SSF53187 TMhelix TRANSMEMBRANE cd03875	11
Lj1g3v4763600.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	AMP1-like carboxypeptidase [Lotus japonicus] gi\|429535563\|dbj\|BAM72481.1\|	Domains CYTOPLASMIC_DOMAIN Coil G3DSA:3.40.630.10 G3DSA:3.50.30.30 IPR003137 IPR007484 NON_CYTOPLASMIC_DOMAIN PF02225 PF04389 PTHR10404 PTHR10404:SF42 SSF52025 SSF53187 TMhelix TRANSMEMBRANE cd08022	16
Lj1g3v4763600.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	AMP1-like carboxypeptidase [Lotus japonicus] gi\|429535563\|dbj\|BAM72481.1\|	Domains CYTOPLASMIC_DOMAIN Coil G3DSA:1.20.930.40 G3DSA:3.40.630.10 G3DSA:3.50.30.30 IPR003137 IPR007365 IPR007484 NON_CYTOPLASMIC_DOMAIN PF02225 PF04253 PF04389 PTHR10404 PTHR10404:SF42 SSF47672 SSF52025 SSF53187 TMhelix TRANSMEMBRANE cd08022	20
Lj2g3v0878750.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: probable glutamate carboxypeptidase 2-like [Cicer arietinum] gi\|502098190\|ref\|XP_004491175.1\|	Domains Coil G3DSA:1.20.930.40 G3DSA:3.40.630.10 IPR007365 IPR007484 PF04253 PF04389 PTHR10404 PTHR10404:SF45 SSF47672 SSF53187 cd08022 mobidb-lite	13
Lj2g3v0878930.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: probable glutamate carboxypeptidase 2-like [Glycine max] gi\|356497577\|ref\|XP_003517636.1\|	Domains Coil G3DSA:1.20.930.40 G3DSA:3.40.630.10 IPR007365 IPR007484 PF04253 PF04389 PTHR10404 PTHR10404:SF45 SSF47672 SSF53187 cd08022 mobidb-lite	13
Lj2g3v0878930.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: probable glutamate carboxypeptidase 2-like [Cicer arietinum] gi\|502098190\|ref\|XP_004491175.1\|	Domains Coil G3DSA:1.20.930.40 G3DSA:3.40.630.10 G3DSA:3.50.30.30 IPR003137 IPR007365 IPR007484 PF02225 PF04253 PF04389 PTHR10404 SSF47672 SSF52025 SSF53187 cd08022	15
Lj2g3v0889190.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: probable glutamate carboxypeptidase 2-like [Cicer arietinum] gi\|502098190\|ref\|XP_004491175.1\|	Domains G3DSA:3.40.630.10 G3DSA:3.50.30.30 IPR003137 IPR007484 PF02225 PF04389 PTHR10404 SSF52025 SSF53187 cd08022	10
Lj4g3v2539320.3 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: endoplasmic reticulum metallopeptidase 1-like [Glycine max] gi\|356512367\|ref\|XP_003524891.1\|	Domains CYTOPLASMIC_DOMAIN G3DSA:3.40.630.10 IPR007484 NON_CYTOPLASMIC_DOMAIN PF04389 PTHR12147 PTHR12147:SF22 SSF53187 TMhelix TRANSMEMBRANE	10
Lj4g3v2539320.4 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: endoplasmic reticulum metallopeptidase 1-like [Glycine max] gi\|356512367\|ref\|XP_003524891.1\|	Domains CYTOPLASMIC_DOMAIN G3DSA:3.40.630.10 IPR007484 NON_CYTOPLASMIC_DOMAIN PF04389 PTHR12147 PTHR12147:SF22 SSF53187 TMhelix TRANSMEMBRANE cd03875	11
Lj4g3v2949950.3 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: endoplasmic reticulum metallopeptidase 1-like [Glycine max] gi\|356512367\|ref\|XP_003524891.1\|	Domains CYTOPLASMIC_DOMAIN G3DSA:3.40.630.10 IPR007484 NON_CYTOPLASMIC_DOMAIN PF04389 PTHR12147 PTHR12147:SF22 SSF53187 TMhelix TRANSMEMBRANE	10
Lj4g3v2949950.4 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: endoplasmic reticulum metallopeptidase 1-like [Glycine max] gi\|356512367\|ref\|XP_003524891.1\|	Domains CYTOPLASMIC_DOMAIN G3DSA:3.40.630.10 IPR007484 NON_CYTOPLASMIC_DOMAIN PF04389 PTHR12147 PTHR12147:SF22 SSF53187 TMhelix TRANSMEMBRANE cd03875	11
LotjaGi2g1v0225800.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Glutamate carboxypeptidase 2; TAIR: AT5G19740.1 Peptidase M28 family protein; Swiss-Prot: sp\|Q9M1S8\|GCP2_ARATH Probable glutamate carboxypeptidase 2; TrEMBL-Plants: tr\|A0A0B2S7Y3\|A0A0B2S7Y3_GLYSO Putative glutamate carboxypeptidase 2; Found in the gene: LotjaGi2g1v0225800	Domains Coil G3DSA:1.20.930.40 G3DSA:3.40.630.10 G3DSA:3.50.30.30 IPR003137 IPR007365 IPR007484 IPR036757 IPR039373 NON_CYTOPLASMIC_DOMAIN PF02225 PF04253 PF04389 PTHR10404 PTHR10404:SF45 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION SSF47672 SSF52025 SSF53187 SignalP-TM SignalP-noTM cd02121 cd08022	26
LotjaGi2g1v0225900.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Glutamate carboxypeptidase 2; TAIR: AT5G19740.1 Peptidase M28 family protein; Swiss-Prot: sp\|Q9M1S8\|GCP2_ARATH Probable glutamate carboxypeptidase 2; TrEMBL-Plants: tr\|I1J4H3\|I1J4H3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0225900	Domains Coil G3DSA:1.20.930.40 G3DSA:3.40.630.10 G3DSA:3.50.30.30 IPR003137 IPR007365 IPR007484 IPR036757 IPR039373 NON_CYTOPLASMIC_DOMAIN PF02225 PF04253 PF04389 PTHR10404 PTHR10404:SF45 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION SSF47672 SSF52025 SSF53187 SignalP-noTM cd02121 cd08022	25
LotjaGi2g1v0225900.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Glutamate carboxypeptidase 2; TAIR: AT5G19740.1 Peptidase M28 family protein; Swiss-Prot: sp\|Q9M1S8\|GCP2_ARATH Probable glutamate carboxypeptidase 2; TrEMBL-Plants: tr\|I1J4H4\|I1J4H4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0225900	Domains G3DSA:3.40.630.10 G3DSA:3.50.30.30 IPR003137 IPR007484 IPR039373 NON_CYTOPLASMIC_DOMAIN PF02225 PF04389 PTHR10404 PTHR10404:SF45 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION SSF52025 SSF53187 SignalP-noTM cd02121 cd08022	19
LotjaGi2g1v0225900.3 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Glutamate carboxypeptidase 2; TAIR: AT5G19740.1 Peptidase M28 family protein; Swiss-Prot: sp\|Q9M1S8\|GCP2_ARATH Probable glutamate carboxypeptidase 2; TrEMBL-Plants: tr\|A0A0B2S7Y3\|A0A0B2S7Y3_GLYSO Putative glutamate carboxypeptidase 2; Found in the gene: LotjaGi2g1v0225900	Domains Coil G3DSA:1.20.930.40 G3DSA:3.40.630.10 G3DSA:3.50.30.30 IPR003137 IPR007365 IPR007484 IPR036757 IPR039373 NON_CYTOPLASMIC_DOMAIN PF02225 PF04253 PF04389 PTHR10404 PTHR10404:SF45 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION SSF47672 SSF52025 SSF53187 SignalP-noTM cd02121 cd08022	25
LotjaGi4g1v0364900.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Endoplasmic reticulum metallopeptidase 1; TAIR: AT1G67420.2 Zn-dependent exopeptidases superfamily protein; Swiss-Prot: sp\|Q7Z2K6\|ERMP1_HUMAN Endoplasmic reticulum metallopeptidase 1; TrEMBL-Plants: tr\|I1K3L0\|I1K3L0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0364900	Domains CYTOPLASMIC_DOMAIN G3DSA:3.40.630.10 IPR007484 NON_CYTOPLASMIC_DOMAIN PF04389 PTHR12147 PTHR12147:SF22 SSF53187 TMhelix TRANSMEMBRANE cd03875	11
LotjaGi5g1v0274600.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Endoplasmic reticulum metallopeptidase 1; TAIR: AT5G20660.1 Zn-dependent exopeptidases superfamily protein; Swiss-Prot: sp\|Q3UVK0\|ERMP1_MOUSE Endoplasmic reticulum metallopeptidase 1; TrEMBL-Plants: tr\|G7I390\|G7I390_MEDTR Endoplasmic reticulum metallopeptidase-like protein; Found in the gene: LotjaGi5g1v0274600	Domains CYTOPLASMIC_DOMAIN G3DSA:3.40.630.10 IPR007484 NON_CYTOPLASMIC_DOMAIN PF04389 PTHR12147 PTHR12147:SF26 SSF53187 TMhelix TRANSMEMBRANE cd03875 mobidb-lite	12

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain	Source	Observations	Saturation (%)
mobidb-lite	MobiDBLite	1	5.88