Domain Predictions — View

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PF08642

Source: Pfam

Description

Histone deacetylation protein Rxt3

Associated GO terms

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0016575 View details of GO:0016575 AmiGO InterPro QuickGO	Biological process	Histone deacetylation	The modification of histones by removal of acetyl groups.	Subterm of GO:0006476 GO:0016570

Associated Lotus transcripts 4

Transcript	Name	Description	Predicted domains	Domain count
Lj0g3v0221259.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	RXT3-like protein [Medicago truncatula] gi\|357504161\|ref\|XP_003622369.1\|	Domains IPR004043 IPR013951 PF08642 SSF69848	4
LotjaGi2g1v0166600_LC.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Peptidyl-prolyl cis-trans isomerase G isoform 1; TAIR: AT5G08450.1 zinc finger CCCH domain protein; Swiss-Prot: sp\|O94707\|RXT3_SCHPO Transcriptional regulatory protein rxt3; TrEMBL-Plants: tr\|A0A151QWG2\|A0A151QWG2_CAJCA Uncharacterized protein; Found in the gene: LotjaGi2g1v0166600_LC	Domains IPR013951 IPR036609 PF08642 PS51257 SSF69848 SignalP-noTM	6
LotjaGi5g1v0196800.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Peptidyl-prolyl cis-trans isomerase G isoform 1; TAIR: AT5G08450.1 zinc finger CCCH domain protein; Swiss-Prot: sp\|O94707\|RXT3_SCHPO Transcriptional regulatory protein rxt3; TrEMBL-Plants: tr\|A0A0S3SPX2\|A0A0S3SPX2_PHAAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0196800	Domains IPR013951 IPR036609 PF08642 SSF69848 mobidb-lite	5
LotjaGi5g1v0196800.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Peptidyl-prolyl cis-trans isomerase G isoform 1; TAIR: AT5G08450.1 zinc finger CCCH domain protein; Swiss-Prot: sp\|O94707\|RXT3_SCHPO Transcriptional regulatory protein rxt3; TrEMBL-Plants: tr\|K7N4V9\|K7N4V9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0196800	Domains IPR013951 IPR036609 PF08642 SSF69848 mobidb-lite	5

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain	Source	Observations	Saturation (%)
mobidb-lite	MobiDBLite	1	25.00