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GO:0016575

View this GO term in other databases

Overview

Field Value
Namespace Biological process
Short description Histone deacetylation
Full defintion The modification of histones by removal of acetyl groups.
Subterm of

Relationships

The relationship of GO:0016575 with other GO terms.

Relationship type GO terms
Is a
Regulates n.a.
Part of n.a.
Positively regulates n.a.
Negatively regulates n.a.

Ancestor tree

A force layout showing the ancestor tree for GO:0016575, and its immediate children. If you wish to explore the tree dynamically, please use the GO Explorer.

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Additional data

This table contains additional metadata associated with the GO entry's definition field.

Field Value
GOCai

Associated Lotus transcripts 32

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Transcript Name Description GO terms GO count
Lj0g3v0137449.1
– Histone deacetylase 6 isoform 2 [Theobroma cacao] gi|508773583|gb|EOY20839.1|
GO terms
2
Lj0g3v0201999.1
– PREDICTED: histone deacetylase 19-like [Glycine max] gi|356551138|ref|XP_003543935.1|
GO terms
2
Lj0g3v0201999.2
– PREDICTED: histone deacetylase 19-like [Glycine max] gi|356551138|ref|XP_003543935.1|
GO terms
2
Lj0g3v0221259.1
– RXT3-like protein [Medicago truncatula] gi|357504161|ref|XP_003622369.1|
GO terms
1
Lj0g3v0332349.1
– Histone deacetylase 6 isoform 2 [Theobroma cacao] gi|508773583|gb|EOY20839.1|
GO terms
2
Lj1g3v0318630.1
– Histone deacetylase [Medicago truncatula] gi|357461841|ref|XP_003601202.1|
GO terms
2
Lj3g3v2996000.1
– Histone deacetylase 9 isoform 11 [Theobroma cacao] gi|508786277|gb|EOY33533.1|
GO terms
2
Lj3g3v2996000.2
– PREDICTED: histone deacetylase 9-like [Cicer arietinum] gi|502145712|ref|XP_004506146.1|
GO terms
2
Lj4g3v1440790.1
– PREDICTED: histone deacetylase 6-like [Glycine max] gi|356513715|ref|XP_003525556.1|
GO terms
2
Lj4g3v1440870.1
– PREDICTED: histone deacetylase 6-like [Glycine max] gi|356513715|ref|XP_003525556.1|
GO terms
2
LotjaGi1g1v0146200.1
– Histone deacetylase; TAIR: AT4G38130.1 histone deacetylase 1; Swiss-Prot: sp|O22446|HDA19_ARATH Histone deacetylase 19; TrEMBL-Plants: tr|I1LWR2|I1LWR2_SOYBN Histone deacetylase; Found in the gene: LotjaGi1g1v0146200
GO terms
2
LotjaGi1g1v0146200.2
– Histone deacetylase; TAIR: AT4G38130.1 histone deacetylase 1; Swiss-Prot: sp|O22446|HDA19_ARATH Histone deacetylase 19; TrEMBL-Plants: tr|I1LWR2|I1LWR2_SOYBN Histone deacetylase; Found in the gene: LotjaGi1g1v0146200
GO terms
2
LotjaGi1g1v0146200.3
– Histone deacetylase; TAIR: AT4G38130.1 histone deacetylase 1; Swiss-Prot: sp|O22446|HDA19_ARATH Histone deacetylase 19; TrEMBL-Plants: tr|I1LWR2|I1LWR2_SOYBN Histone deacetylase; Found in the gene: LotjaGi1g1v0146200
GO terms
2
LotjaGi1g1v0146200.4
– Histone deacetylase; TAIR: AT4G38130.1 histone deacetylase 1; Swiss-Prot: sp|O22446|HDA19_ARATH Histone deacetylase 19; TrEMBL-Plants: tr|I1LWR2|I1LWR2_SOYBN Histone deacetylase; Found in the gene: LotjaGi1g1v0146200
GO terms
2
LotjaGi1g1v0146200.5
– Histone deacetylase; TAIR: AT4G38130.1 histone deacetylase 1; Swiss-Prot: sp|O22446|HDA19_ARATH Histone deacetylase 19; TrEMBL-Plants: tr|I1LWR2|I1LWR2_SOYBN Histone deacetylase; Found in the gene: LotjaGi1g1v0146200
GO terms
2
LotjaGi1g1v0146200.6
– Histone deacetylase; TAIR: AT4G38130.1 histone deacetylase 1; Swiss-Prot: sp|O22446|HDA19_ARATH Histone deacetylase 19; TrEMBL-Plants: tr|A0A151RPJ3|A0A151RPJ3_CAJCA Histone deacetylase; Found in the gene: LotjaGi1g1v0146200
GO terms
2
LotjaGi1g1v0176200.1
– Histone deacetylase; TAIR: AT5G63110.1 histone deacetylase 6; Swiss-Prot: sp|Q9FML2|HDA6_ARATH Histone deacetylase 6; TrEMBL-Plants: tr|G7J4T5|G7J4T5_MEDTR Histone deacetylase; Found in the gene: LotjaGi1g1v0176200
GO terms
2
LotjaGi1g1v0176200.2
– Histone deacetylase; TAIR: AT5G63110.1 histone deacetylase 6; Swiss-Prot: sp|Q9FML2|HDA6_ARATH Histone deacetylase 6; TrEMBL-Plants: tr|G7J4T5|G7J4T5_MEDTR Histone deacetylase; Found in the gene: LotjaGi1g1v0176200
GO terms
2
LotjaGi2g1v0166600_LC.1
– Peptidyl-prolyl cis-trans isomerase G isoform 1; TAIR: AT5G08450.1 zinc finger CCCH domain protein; Swiss-Prot: sp|O94707|RXT3_SCHPO Transcriptional regulatory protein rxt3; TrEMBL-Plants: tr|A0A151QWG2|A0A151QWG2_CAJCA Uncharacterized protein; Found in the gene: LotjaGi2g1v0166600_LC
GO terms
1
LotjaGi3g1v0479900.1
– Histone deacetylase; TAIR: AT3G44680.1 histone deacetylase 9; Swiss-Prot: sp|Q8H0W2|HDA9_ARATH Histone deacetylase 9; TrEMBL-Plants: tr|A0A151TNQ1|A0A151TNQ1_CAJCA Histone deacetylase; Found in the gene: LotjaGi3g1v0479900
GO terms
2
LotjaGi3g1v0479900.2
– Histone deacetylase; TAIR: AT3G44680.1 histone deacetylase 9; Swiss-Prot: sp|Q8H0W2|HDA9_ARATH Histone deacetylase 9; TrEMBL-Plants: tr|A0A151TNQ1|A0A151TNQ1_CAJCA Histone deacetylase; Found in the gene: LotjaGi3g1v0479900
GO terms
2
LotjaGi3g1v0479900.3
– Histone deacetylase; TAIR: AT3G44680.1 histone deacetylase 9; Swiss-Prot: sp|Q8H0W2|HDA9_ARATH Histone deacetylase 9; TrEMBL-Plants: tr|A0A151TNQ1|A0A151TNQ1_CAJCA Histone deacetylase; Found in the gene: LotjaGi3g1v0479900
GO terms
2
LotjaGi3g1v0479900.4
– Histone deacetylase; TAIR: AT3G44680.1 histone deacetylase 9; Swiss-Prot: sp|Q8H0W2|HDA9_ARATH Histone deacetylase 9; TrEMBL-Plants: tr|A0A151TNQ1|A0A151TNQ1_CAJCA Histone deacetylase; Found in the gene: LotjaGi3g1v0479900
GO terms
2
LotjaGi3g1v0479900.5
– Histone deacetylase; TAIR: AT3G44680.1 histone deacetylase 9; Swiss-Prot: sp|Q8H0W2|HDA9_ARATH Histone deacetylase 9; TrEMBL-Plants: tr|A0A151TNQ1|A0A151TNQ1_CAJCA Histone deacetylase; Found in the gene: LotjaGi3g1v0479900
GO terms
2
LotjaGi4g1v0229800.1
– Histone deacetylase; TAIR: AT5G63110.1 histone deacetylase 6; Swiss-Prot: sp|Q9FML2|HDA6_ARATH Histone deacetylase 6; TrEMBL-Plants: tr|A0A0S3R6F7|A0A0S3R6F7_PHAAN Histone deacetylase; Found in the gene: LotjaGi4g1v0229800
GO terms
2
LotjaGi4g1v0229800.2
– Histone deacetylase; TAIR: AT5G63110.1 histone deacetylase 6; Swiss-Prot: sp|Q9FML2|HDA6_ARATH Histone deacetylase 6; TrEMBL-Plants: tr|A0A0S3R6F7|A0A0S3R6F7_PHAAN Histone deacetylase; Found in the gene: LotjaGi4g1v0229800
GO terms
2
LotjaGi4g1v0229800.3
– Histone deacetylase; TAIR: AT5G63110.1 histone deacetylase 6; Swiss-Prot: sp|Q9FML2|HDA6_ARATH Histone deacetylase 6; TrEMBL-Plants: tr|A0A0S3R6F7|A0A0S3R6F7_PHAAN Histone deacetylase; Found in the gene: LotjaGi4g1v0229800
GO terms
2
LotjaGi4g1v0230000.1
– Histone deacetylase; TAIR: AT5G63110.1 histone deacetylase 6; Swiss-Prot: sp|Q9FML2|HDA6_ARATH Histone deacetylase 6; TrEMBL-Plants: tr|A0A0L9TQL1|A0A0L9TQL1_PHAAN Histone deacetylase; Found in the gene: LotjaGi4g1v0230000
GO terms
2
LotjaGi4g1v0230000.2
– Histone deacetylase; TAIR: AT5G63110.1 histone deacetylase 6; Swiss-Prot: sp|Q9FML2|HDA6_ARATH Histone deacetylase 6; TrEMBL-Plants: tr|A0A0L9TQL1|A0A0L9TQL1_PHAAN Histone deacetylase; Found in the gene: LotjaGi4g1v0230000
GO terms
2
LotjaGi4g1v0230000.3
– Histone deacetylase; TAIR: AT5G63110.1 histone deacetylase 6; Swiss-Prot: sp|P56519|HDAC2_CHICK Histone deacetylase 2; TrEMBL-Plants: tr|A0A0L9TQL1|A0A0L9TQL1_PHAAN Histone deacetylase; Found in the gene: LotjaGi4g1v0230000
GO terms
2
LotjaGi5g1v0196800.1
– Peptidyl-prolyl cis-trans isomerase G isoform 1; TAIR: AT5G08450.1 zinc finger CCCH domain protein; Swiss-Prot: sp|O94707|RXT3_SCHPO Transcriptional regulatory protein rxt3; TrEMBL-Plants: tr|A0A0S3SPX2|A0A0S3SPX2_PHAAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0196800
GO terms
1
LotjaGi5g1v0196800.2
– Peptidyl-prolyl cis-trans isomerase G isoform 1; TAIR: AT5G08450.1 zinc finger CCCH domain protein; Swiss-Prot: sp|O94707|RXT3_SCHPO Transcriptional regulatory protein rxt3; TrEMBL-Plants: tr|K7N4V9|K7N4V9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0196800
GO terms
1

Co-occuring GO terms 1

A list of co-occurring GO terms within the L. japonicus gene space:

GO term Namespace Name Observations Saturation (%)
GO:0016575
Biological process Histone deacetylation 1 3.13