Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
No description is available for this domain.
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | SAGA complex | A SAGA-type histone acetyltransferase complex that contains Spt8 (in budding yeast) or a homolog thereof; additional polypeptides include Spt group, consisting of Spt7, Spt3, and Spt20/Ada5, which interact with the TATA-binding protein (TBP); the Ada group, consisting of Ada1, Ada2, Ada3, Ada4/Gcn5, and Ada5/Spt20, which is functionally linked to the nucleosomal HAT activity; Tra1, an ATM/PI-3 kinase-related protein that targets DNA-bound activators for recruitment to promoters; the TBP-associated factor (TAF) proteins, consisting of Taf5, Taf6, Taf9, Taf10, and Taf12, which mediate nucleosomal HAT activity and are thought to help recruit the basal transcription machinery; the ubiquitin specifc protease Ubp-8. |
| Transcript | Name | Description | Predicted domains | Domain count |
|---|---|---|---|---|
| – | SGF29 tudor-like domain-containing protein [Arabidopsis thaliana] gi|238479921|ref|NP_001154650.1| | 6 | ||
| – | SGF29 tudor-like domain-containing protein [Arabidopsis thaliana] gi|22331369|ref|NP_189382.2| | 6 | ||
| – | SGF29 tudor-like domain protein; TAIR: AT3G27460.1 SGF29 tudor-like domain-containing protein; Swiss-Prot: sp|Q9DA08|SGF29_MOUSE SAGA-associated factor 29; TrEMBL-Plants: tr|I3T878|I3T878_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0612400 | 9 |
A list of co-occurring predicted domains within the L. japonicus gene space:
| Predicted domain | Source | Observations | Saturation (%) |
|---|---|---|---|
| mobidb-lite | MobiDBLite | 1 | 33.33 |