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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0612400 |
| Transcript ID | LotjaGi1g1v0612400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | SGF29 tudor-like domain protein; TAIR: AT3G27460.1 SGF29 tudor-like domain-containing protein; Swiss-Prot: sp|Q9DA08|SGF29_MOUSE SAGA-associated factor 29; TrEMBL-Plants: tr|I3T878|I3T878_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0612400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:115779589..115785147) extracted from Lotus japonicus Gifu genome v1.2.
ATGACTGGACATGTTTCCAGTTGAACCAGTTACCGGCATGAATAAAGTTGAATGAAACGAAGACAAAATTTCCCCTTTTT CGTAAAAAAGAAAATTCAAAAACGGAAAATTCATTCGGTGTTTCAGTTTTCGATTTTCAATTTTCAATTTTCGATTCCGA GCTGTTGAAGGTGAAGCGAGAGTTGAATTCTACGGAACTCTGGTTTTTTTAATTTTTTTCTGTGTATTTATTTGAATTTT TTCGACGAAATCGATGTCGACGACGCCGGAGATTGGCGCAATCTTGGAAAACTCGAAGGAGCTCGATCGGTTAAGGAAAG ATCAGGAGGATATCTTGTCGGAAATCAACAAGCTTCACAAAAAGCTTCAAGCCAGTGAGTTTTTTTTTTTTTTTTTTTTT TTTTTTTCATTCATGCTTTAATTAATTTCCCTTTTTTACTCTTTTGTCCACATTCATCATCATGCTAATGTCAAAGCCAG TGCTTGTTTGTTGAGAATGAAATTACTCTACTTGTTTCCTTATTTTCCGCAACTGCAATTGCGGCCGCAATGTAAAGGGT TTTCGAGTCCCCGCATTAACTCACATTTGTTTGCAATTTCGCAATTGCAATGACGACCGCAACCGCAATTTAAAATTCTG TTTTGGAAACAGGATCTGATATTTGGTTTATGATTATTTTATTCTCTACATATGTGTATGTAGTTGGTTGTTGATAGTTT CTTGTTGCTTCAATGTAGCTCCTGAAGTGGTTGAGAAGCCTGGAGATACCTCATTATCTAGGCTTAAAATGTTGTACACT CAAGCAAAAGATCTTTCTGACAATGAAGCAAAGTATGTTTGTTCTGTAGCTCTGAAGCATTTTATTTTCTTTTACACTGT TTCGAATCATCAACACACAGTTTCTTAACATTAGAGTAAGCTACTCTTACATAATCTTAAATTTGGTTGCAGCATTTCCA ACAAACTGATAAGCCAACTTGATGCCCTGCATCCTCCGGGAGCACAAGGGCAGCAGCGAAGAAGATTAGGTTTGTTTCCA AGTTGTGACCTATAAATGTTTTTCACGTGAAATATAATTGCTTCAAAGAACATATTTGATTATTGAGTCTTGCTAGTTTC ATTTTCATGTGCCTTGTCTAATTGACAGTACTTGTGATACAGAAGGCAGTGAGCAGAAAAGAAAGCGAGTAAAGGCTGAT TCAGACATTACAAGGTTAAATCCTAGTATGCGAAACCAACTTGAGGCTTGTGCCAGTCTTAAGGGTGAACAGGTATGAAT TTGCTTTGAAGTTTGATCAATATAAATCAGTGAACATATATTGATTGCTCTTTTTCTTTTTATTGATAAAGTTAATTTTT CTTTGTTATAGTACGCTGTGCTTTGGGCAGTATATTGCTTCTGTTTAGCTCGTTTGGGTTAAACTGTTTCTGTTAGTTTG GTTAAAGCTTACAGCTGTTAGAGATTCTGTTAACTAAATGAGCTGTTTTGAAGTTAATTATAAGTTATAGTTTAGCTTTT AGATGTTAGATTTATAGGAACCTTTCGAAGGTTCTCCGTGTCAATCATACTAGCTTTGTCACAGACATAGTTGTTGCCTC TCAGTATTTTCTCTTTCTTCCTATTATTTCTTCACTTTCTTGGGAAATCATTTCTTACAATGAAGCATCTTTAGTCCTAT TTCATTTGGTTAATGTTCTTGCTTCTCCTTCCTCAGGTAGCAGCTAGGGTGACACCACGTAATGCTGATAAGGATGAATG GTTTGTTGTAAAAGTGATTCATTTTGACAAAGAGTCGAAGGAGTAAGTATACATTTCTGTATTTTTCAATCTTTCAATGG AATATTTTACAGTTATTTTAGTAATATTGTTTTTGGGCATTTAATCTCCTCCTTTGGGTTAGCGCTTGTTACACTAACAC ATTGTTTATGGGAAAGAAATGTATGTTCCTCTCCTCAATTATCTGCAAGGGGACTTTTGTAATTGCCTTAGAATAGAGTG CCACTTTCTTTTGCTAACTTGTTTTCAATTTGGGGCAAAGTGGGCTATCCTCTACTAGCATGTACCAAGTACCAACTATC CGAAAAACTCAAGTTCTCAGATGAAGACACATGAACAGTATTCTATTTCTAACACGCCCCTCACGTGAGAACCTATTGGG CTTGAAGTATGAATAATGTGCACACCCAACTATGTAATGATGAAATTCATTTTTATTTTTTTTATAAGTAGAATGGTGGT GTGGGAAAATTTGAACTTAAGGTTATTTGGTCATAGAAGCTTTGGTCGATGCGATAAACCAATTATATCAAAAGTTTAAG CTATTAGGTAAAGATACATTGGTAGCTTTATTTTATATTTGTAATTCAGGATCAACTATATAATGCCCGAGGGTCTTCTT GTTAACCTAAAGGCTCATCTACTCAATCCATGATCTATTAGTGCTTTACATTTTGATTACTGTTTGAGTTTCTTCTTTTT TATTTTTTTATTTTTAAGTGATTACATTTTTAAGTATTATGAAGTTATTTTTCTCACAGAAAAGTACAGTAAGTCAAGTA TTGATTAGATATAAGTTTACTAAAATTCAGATCATGATGGATGGAAAAATTTAGCCAGCGCATCGCTTTAGTTAGGCTAA TCATAAGCTCCTTTTTTTGGGATGAGTTTGTTTGTCAAAATCTAACTTATTGAGTTTGTCATTTGGCCATCCTTAAGCTG TTTCAATAGCTGAGATGTTTACATGGTATAAGTTACTGTTGCTCATTTTGACTTTCATCTTTTTATGATTATCCTTTTTC ATTATTTTAGTAATTATTTTTGTGAAACGATTTTACAGATTTGAAGTACTAGATGAGGAGCCTGGTGATGATGAAGAGAG CAGTGGCCAAAGGTAACTTATTTGGAAATATATTTTGTTTAATTGTGAATGCTTATGTGTATGTTTATGACCAACCATCT CAAAAGTTTAAGCTCTTAGGTAGACACATAAATGGTTTTTATATTATATTTCTATGATGTTGCATCACGTAAGAGCCCTT TGAAATTGAAGCATTGACAATATACTGGCTCACCTACCTTTAGTTGAAATTCAACTTTTGTTTGAAGAGTGTGGGGGTGG CAAGGATCTAACTCTAGACATCTTGGTCAGAGAGGCTCCAATATCATGGCATGAACCTACCAACCATCCCAAACGTTTAA GCTGCTGGGTGAATATACATGCATGTTTTTACATCATAATTCTAACATTGTACCATGCTTGAGTTGCTGCTTAAAACTTA CATGGGAATTTATTTTCACAATAACAATCGAAGCCTTTTTCCATTACTTGGAGTGAACTACATGGATCAAAGAATGCCCT AATGTATCATATATCATGTCTAAAGATAGACCATTTAGATCCAAGTTCTTAATAGTTTGGTCCATAAGTTTCCTTGGTGT CCTTCTATCTCTTACTGTTGAACTGTCTTTGCTATTGCCTATTCTACCCATTTATTGGTGCTTCTGCAAGCCTTTTCCAT GTTTGCTCGAACAATTTAAGGTAAGTCTTTACCATCATTTCCATAATAGATACTCCCTTAACTTCTCTGATAGATCCATT CCTAATCCTGTATCACATTTTGTATCTCCACTCATCTATGATAACATTCTCATTTTTACAGCATTGATCATACTAGCTTG TTGGCCCTTTACTCCCTAGCACTCAAATCCATGCAGTATTGAATGTCTTATAGTTGTGCAGTAAAGTTTTCTCTTAAGTA TGAGCAACACTTTTCTATCACAGTTTATATCTAAAGCCATGGTTGCCAAAATCATGATTTTAATCGCATAATCGCACGAT GTATGATTTGTGCAACCCTGGTCGATTAAAATCATGACCAAAGTCGCTTTTTTACTTGATCATTCCTCAATCGTGATTTT GATCATGAAAATTGCAATTTCACAATTTCTTAAGCCTGGATTTGAAGCGGTTAGCCCTAAATCTCAACCCATTTCTGTTT TGTGATCATAAATGTTTCAACCGGCTGGGTGCTCCCTTCCACGGTGCTTATTCTCCTTCAGCGACGTGTTCTTCTCTGAC AATGTCTGCTTCCCTGCATTTCCTCTGTCCGTAACTTGTTCTGCAACGTCTTTTATGCTTGGAATTTATTAATTCTGTTT TCCCTTGGTGCCTTTAAGATTAGCATTAGTTCTGCTCTGCAACATCTTTCCAACTCAGGAGTTATTGGTTGTGTTCTACT GCACCTTTTCAGCTTGTGAGCTATAAGTCTTGCTTGGAGTTAGGATTTTCAATACTTTTTTGGCTTTTGCATGACATTCT TATGGAATATGAATGCGTATAAGTTTATTTAGGTTTCTAGTGATTTATAGTTTTTTTCCTGTTTATGCTACTTTTATATG CACACACTCACACATACATATTAATTTAAACGCACATGTACATATGCTATCTAAGGATCAGGTTTACGATTTTATGAGTT TCGCCTCCCTTTCCATTTAAATATCCCGATTTTGACTACCTTGCCCGAAACATTCCTTGATTTACTCCACTCTACATGAA TCTGATAGTTTACATCTTCATTTTCTTAGTAGGGAATGTGAACTATTGTTGCTGTATTTGAATGGGTTGTTCATTATTAT TTATTTATGGTTTTTCTGCTGCATTCAGACAGTACAAGCTTCCCATGGCAAATATCATTCCTTTCCCCAAGAGTAACGAT CCTTCGAGCGCCCCAGATTTCCTTCCTGGAAAACATGTATTGGCAGTCTATCCAGGAACTACCGCACTTTATAAAGCAAC AGTTGTCCATTGCCCTCGCAGGGTAATCATTCTCTCCTTTCCTTAATAGAGTGGGATCACCTGATTTTCCCTGACTTCAT TACTCTATAATATATAATCCTGGTTAGTTATAATTATAACTTTGTTGACTGACATGATACTAACCAATAGTACTCTTGTA CATGTTCTGGGCTATTCTCCATTTCACAATTGTGCAGAGGAAGACAGATGAGTAAGTATATCTATTATGATCTGAATGCA CATTTTTTTTTATTACTTGTTATGATTGCTTACTTTTTGAGCTGATTGGAACAGTTATGTGTTGGAATTTGATGATGATG AAGAAGATGGATCCTTACCTCAAAGGACAGTGCCCTTCCACAAAGTGGTTCCTCTGCCAGAAGGACATCGCCAATAAGTT TAAGCTATTTGTAGTTGTTGTATAAAGTAGAAACTAACCTATTGCAGTGCCTGTTGTGTAATATTATCCATGTGTTATTA TGGTTCCTTACAATAACATTGTAGTGTAATTTTATGGACGTGTGAATGACATTGCAGTTTAATTTTATGTTCTTTGGGAA TGATAAATGTCCAAGTTTTTTTTTTCTAAGAACTAGTATGGTTGCCTGTCTGCAAGTTCCATTATTTGAAAAATTAGGCA TAACATTTAAAAAGCTTTTACCTCTCTCTCTTGCAAGTACCTAAGATTACATAGAAGAAATAAGAGAGAAAGAAACACCA CTCAAATGAGTTATGATCTTTCCATATGACTACCTCATA
CDS sequence (LotjaGi1g1v0612400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCGACGACGCCGGAGATTGGCGCAATCTTGGAAAACTCGAAGGAGCTCGATCGGTTAAGGAAAGATCAGGAGGATAT CTTGTCGGAAATCAACAAGCTTCACAAAAAGCTTCAAGCCACTCCTGAAGTGGTTGAGAAGCCTGGAGATACCTCATTAT CTAGGCTTAAAATGTTGTACACTCAAGCAAAAGATCTTTCTGACAATGAAGCAAACATTTCCAACAAACTGATAAGCCAA CTTGATGCCCTGCATCCTCCGGGAGCACAAGGGCAGCAGCGAAGAAGATTAGAAGGCAGTGAGCAGAAAAGAAAGCGAGT AAAGGCTGATTCAGACATTACAAGGTTAAATCCTAGTATGCGAAACCAACTTGAGGCTTGTGCCAGTCTTAAGGGTGAAC AGGTAGCAGCTAGGGTGACACCACGTAATGCTGATAAGGATGAATGGTTTGTTGTAAAAGTGATTCATTTTGACAAAGAG TCGAAGGAATTTGAAGTACTAGATGAGGAGCCTGGTGATGATGAAGAGAGCAGTGGCCAAAGACAGTACAAGCTTCCCAT GGCAAATATCATTCCTTTCCCCAAGAGTAACGATCCTTCGAGCGCCCCAGATTTCCTTCCTGGAAAACATGTATTGGCAG TCTATCCAGGAACTACCGCACTTTATAAAGCAACAGTTGTCCATTGCCCTCGCAGGAGGAAGACAGATGATTATGTGTTG GAATTTGATGATGATGAAGAAGATGGATCCTTACCTCAAAGGACAGTGCCCTTCCACAAAGTGGTTCCTCTGCCAGAAGG ACATCGCCAATAA
Protein sequence (LotjaGi1g1v0612400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSTTPEIGAILENSKELDRLRKDQEDILSEINKLHKKLQATPEVVEKPGDTSLSRLKMLYTQAKDLSDNEANISNKLISQ LDALHPPGAQGQQRRRLEGSEQKRKRVKADSDITRLNPSMRNQLEACASLKGEQVAARVTPRNADKDEWFVVKVIHFDKE SKEFEVLDEEPGDDEESSGQRQYKLPMANIIPFPKSNDPSSAPDFLPGKHVLAVYPGTTALYKATVVHCPRRRKTDDYVL EFDDDEEDGSLPQRTVPFHKVVPLPEGHRQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 14 | 270 | 257 | 6.3E-94 | – | |
| PANTHER | 14 | 270 | 257 | 6.3E-94 | ||
| Coils | 17 | 37 | 21 | - | – | |
| MobiDBLite | 84 | 118 | 35 | - | – | |
| MobiDBLite | 96 | 112 | 17 | - | – | |
| ProSiteProfiles | 125 | 270 | 146 | 45.224 | ||
| Pfam | 131 | 265 | 135 | 3.4E-33 | ||
| Gene3D | 133 | 196 | 64 | 3.1E-6 | – | |
| Gene3D | 200 | 269 | 70 | 3.1E-15 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | SAGA complex | A SAGA-type histone acetyltransferase complex that contains Spt8 (in budding yeast) or a homolog thereof; additional polypeptides include Spt group, consisting of Spt7, Spt3, and Spt20/Ada5, which interact with the TATA-binding protein (TBP); the Ada group, consisting of Ada1, Ada2, Ada3, Ada4/Gcn5, and Ada5/Spt20, which is functionally linked to the nucleosomal HAT activity; Tra1, an ATM/PI-3 kinase-related protein that targets DNA-bound activators for recruitment to promoters; the TBP-associated factor (TAF) proteins, consisting of Taf5, Taf6, Taf9, Taf10, and Taf12, which mediate nucleosomal HAT activity and are thought to help recruit the basal transcription machinery; the ubiquitin specifc protease Ubp-8. |
Expression pattern of LotjaGi1g1v0612400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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