Domain Predictions — View

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PTHR33248:SF3

Source: PANTHER

Description

No description is available for this domain.

Associated GO terms

Unable to find any GO terms for the transcript with the identifier.

Associated Lotus transcripts 15

Transcript	Name	Description	Predicted domains	Domain count
LotjaGi1g1v0093100_LC.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	DNA topoisomerase; TAIR: AT1G52603.1 GRF zinc finger protein; Swiss-Prot: sp\|Q9LVP1\|TOP3A_ARATH DNA topoisomerase 3-alpha; TrEMBL-Plants: tr\|A0A1J6JGG4\|A0A1J6JGG4_NICAT Uncharacterized protein; Found in the gene: LotjaGi1g1v0093100_LC	Domains CYTOPLASMIC_DOMAIN IPR010666 NON_CYTOPLASMIC_DOMAIN PF06839 PTHR33248 PTHR33248:SF3 TMhelix TRANSMEMBRANE	8
LotjaGi1g1v0330200_LC.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	GRF zinc finger protein; TAIR: AT5G33393.1 hypothetical protein; Swiss-Prot: sp\|A8FNQ7\|RPOA_CAMJ8 DNA-directed RNA polymerase subunit alpha; TrEMBL-Plants: tr\|A0A072VL81\|A0A072VL81_MEDTR GRF zinc finger protein; Found in the gene: LotjaGi1g1v0330200_LC	Domains PTHR33248 PTHR33248:SF3	3
LotjaGi1g1v0354600.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	GRF zinc finger protein; TAIR: AT1G52603.1 GRF zinc finger protein; Swiss-Prot: sp\|P38207\|APN2_YEAST DNA-(apurinic or apyrimidinic site) lyase 2; TrEMBL-Plants: tr\|A0A072VL81\|A0A072VL81_MEDTR GRF zinc finger protein; Found in the gene: LotjaGi1g1v0354600	Domains CYTOPLASMIC_DOMAIN IPR010666 NON_CYTOPLASMIC_DOMAIN PF06839 PTHR33248 PTHR33248:SF3 TMhelix TRANSMEMBRANE mobidb-lite	9
LotjaGi1g1v0435900_LC.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	DNA topoisomerase; TAIR: AT5G15690.1 zinc ion binding protein; Swiss-Prot: sp\|Q9ZS96\|Y4478_ARATH Uncharacterized protein At4g04775; TrEMBL-Plants: tr\|A0A072VLE9\|A0A072VLE9_MEDTR GRF zinc finger protein; Found in the gene: LotjaGi1g1v0435900_LC	Domains Coil IPR010666 PF06839 PTHR33248 PTHR33248:SF3	5
LotjaGi1g1v0741600_LC.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	GRF zinc finger protein; TAIR: AT1G52603.1 GRF zinc finger protein; Swiss-Prot: sp\|P38207\|APN2_YEAST DNA-(apurinic or apyrimidinic site) lyase 2; TrEMBL-Plants: tr\|G7L8Z2\|G7L8Z2_MEDTR Uncharacterized protein; Found in the gene: LotjaGi1g1v0741600_LC	Domains PTHR33248 PTHR33248:SF3 mobidb-lite	4
LotjaGi3g1v0112000_LC.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	GRF zinc finger protein; TAIR: AT1G52603.1 GRF zinc finger protein; Swiss-Prot: sp\|Q9NG98\|TOP3A_DROME DNA topoisomerase 3-alpha; TrEMBL-Plants: tr\|A0A0B2QQH9\|A0A0B2QQH9_GLYSO Uncharacterized protein; Found in the gene: LotjaGi3g1v0112000_LC	Domains Coil IPR010666 PF06839 PTHR33248 PTHR33248:SF3	5
LotjaGi3g1v0208400_LC.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	GRF zinc finger protein; TAIR: AT1G52603.1 GRF zinc finger protein; Swiss-Prot: sp\|Q9ZS96\|Y4478_ARATH Uncharacterized protein At4g04775; TrEMBL-Plants: tr\|A0A0B2QQH9\|A0A0B2QQH9_GLYSO Uncharacterized protein; Found in the gene: LotjaGi3g1v0208400_LC	Domains IPR010666 PF06839 PTHR33248 PTHR33248:SF3 mobidb-lite	5
LotjaGi3g1v0208400_LC.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	GRF zinc finger protein; TAIR: AT1G52603.1 GRF zinc finger protein; Swiss-Prot: sp\|Q9ZS96\|Y4478_ARATH Uncharacterized protein At4g04775; TrEMBL-Plants: tr\|A0A0B2QQH9\|A0A0B2QQH9_GLYSO Uncharacterized protein; Found in the gene: LotjaGi3g1v0208400_LC	Domains PTHR33248 PTHR33248:SF3 mobidb-lite	4
LotjaGi3g1v0257300_LC.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	GRF zinc finger family protein; TAIR: AT2G27170.1 Structural maintenance of chromosomes (SMC) family protein; Swiss-Prot: sp\|Q56YN8\|SMC3_ARATH Structural maintenance of chromosomes protein 3; TrEMBL-Plants: tr\|A0A0D9YAQ7\|A0A0D9YAQ7_9ORYZ Uncharacterized protein; Found in the gene: LotjaGi3g1v0257300_LC	Domains CYTOPLASMIC_DOMAIN Coil IPR010666 NON_CYTOPLASMIC_DOMAIN PF06839 PTHR33248 PTHR33248:SF3 TMhelix TRANSMEMBRANE	9
LotjaGi3g1v0285000_LC.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	DNA topoisomerase; TAIR: AT1G52603.1 GRF zinc finger protein; Swiss-Prot: sp\|Q9LVP1\|TOP3A_ARATH DNA topoisomerase 3-alpha; TrEMBL-Plants: tr\|A0A1J6JGG4\|A0A1J6JGG4_NICAT Uncharacterized protein; Found in the gene: LotjaGi3g1v0285000_LC	Domains CYTOPLASMIC_DOMAIN IPR010666 NON_CYTOPLASMIC_DOMAIN PF06839 PTHR33248 PTHR33248:SF3 TMhelix TRANSMEMBRANE	8
LotjaGi3g1v0285000_LC.4 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	DNA topoisomerase; TAIR: AT1G52603.1 GRF zinc finger protein; Swiss-Prot: sp\|Q9LVP1\|TOP3A_ARATH DNA topoisomerase 3-alpha; TrEMBL-Plants: tr\|A0A1J6JGG4\|A0A1J6JGG4_NICAT Uncharacterized protein; Found in the gene: LotjaGi3g1v0285000_LC	Domains CYTOPLASMIC_DOMAIN IPR010666 NON_CYTOPLASMIC_DOMAIN PF06839 PTHR33248 PTHR33248:SF3 TMhelix TRANSMEMBRANE	8
LotjaGi4g1v0245000.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	GRF zinc finger protein; TAIR: AT2G06265.1 zinc ion-binding protein; Swiss-Prot: sp\|A8K979\|ERI2_HUMAN ERI1 exoribonuclease 2; TrEMBL-Plants: tr\|A0A072V5S4\|A0A072V5S4_MEDTR GRF zinc finger protein; Found in the gene: LotjaGi4g1v0245000	Domains CYTOPLASMIC_DOMAIN IPR010666 NON_CYTOPLASMIC_DOMAIN PF06839 PTHR33248 PTHR33248:SF3 TMhelix TRANSMEMBRANE	8
LotjaGi5g1v0283300.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	GRF zinc finger protein; TAIR: AT1G52603.1 GRF zinc finger protein; Swiss-Prot: sp\|P38207\|APN2_YEAST DNA-(apurinic or apyrimidinic site) lyase 2; TrEMBL-Plants: tr\|A0A072VL81\|A0A072VL81_MEDTR GRF zinc finger protein; Found in the gene: LotjaGi5g1v0283300	Domains CYTOPLASMIC_DOMAIN IPR010666 NON_CYTOPLASMIC_DOMAIN PF06839 PTHR33248 PTHR33248:SF3 TMhelix TRANSMEMBRANE mobidb-lite	9
LotjaGi6g1v0176400_LC.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	DNA topoisomerase; TAIR: AT5G63920.1 topoisomerase 3alpha; Swiss-Prot: sp\|Q9LVP1\|TOP3A_ARATH DNA topoisomerase 3-alpha; TrEMBL-Plants: tr\|A0A078CE87\|A0A078CE87_BRANA BnaC09g25450D protein; Found in the gene: LotjaGi6g1v0176400_LC	Domains CYTOPLASMIC_DOMAIN IPR010666 NON_CYTOPLASMIC_DOMAIN PF06839 PTHR33248 PTHR33248:SF3 TMhelix TRANSMEMBRANE	8
LotjaGi6g1v0233000_LC.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	DNA topoisomerase; TAIR: AT1G52603.1 GRF zinc finger protein; Swiss-Prot: sp\|Q9LVP1\|TOP3A_ARATH DNA topoisomerase 3-alpha; TrEMBL-Plants: tr\|A0A1J6JGG4\|A0A1J6JGG4_NICAT Uncharacterized protein; Found in the gene: LotjaGi6g1v0233000_LC	Domains CYTOPLASMIC_DOMAIN IPR010666 NON_CYTOPLASMIC_DOMAIN PF06839 PTHR33248 PTHR33248:SF3 TMhelix TRANSMEMBRANE	8

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain	Source	Observations	Saturation (%)
TRANSMEMBRANE	Phobius	1	6.67