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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0245000 |
| Transcript ID | LotjaGi4g1v0245000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | GRF zinc finger protein; TAIR: AT2G06265.1 zinc ion-binding protein; Swiss-Prot: sp|A8K979|ERI2_HUMAN ERI1 exoribonuclease 2; TrEMBL-Plants: tr|A0A072V5S4|A0A072V5S4_MEDTR GRF zinc finger protein; Found in the gene: LotjaGi4g1v0245000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:59684314..59685059) extracted from Lotus japonicus Gifu genome v1.2.
CACATGGGTAGCACATGACCTTCCAACGGTCATCTTCTTCCCCCTTTTCTTCTATAAAACAGAGCATGGACATGAGGGGA AAGATGAAGGGTATGGGAGCTTCTCCAACAGTTGCAGCTTGCGTGAAAGGCTAAGGGAAAGACAAAGAAGCTTCTCCAAC TGCTATAACTCCTTGGGTTCGAAGGTTATGGGGGGATTTAGCGAAGGTTCCTCTACCTGTTCTGGATCTGGAAGGCGACT CCACAGGTCCAAGCCACTGAAGATTCTTTGCGATTGCGGAGTTGAAGCTCCCCTTGTAGCATCAGGGACACCATACAGTC ATGGAAGAGTGTTTTATGGTTGTGGATTGTACAAGGTATGTTTGTGTTGTGAAATTAAGTTGGTGTGGTTGTGTTGTGAA TTAACCCCTGTTTTAATTTTGGTATCATTTTCGCAGGTATATGGCAAGAAGCAGTGCAGATTCTTTAAATGGGTTGACGA AGTCGATGGTCATGCAGTGGAAGATAGGGAAGACAAGGTTGTTCGGGCATTGACAAGAAAAATTGTGGAAATGAGGAAGA CACAAGGGCAATTGCAAATGTTTTTAGCAATTGCCATATTTGCATTGTTGTTTGTACTGTTCTTGTATGTAACCAAGTAG GGGGAAATGGGTTATGGGAAATAATTGTAGCTTAATCAATGTAAAAATTATGTGTTGTGCCTTGTGAAATAATTGTAGCA CGAAAATTGTGAAATATAAGTTGGAG
CDS sequence (LotjaGi4g1v0245000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGGGGATTTAGCGAAGGTTCCTCTACCTGTTCTGGATCTGGAAGGCGACTCCACAGGTCCAAGCCACTGAAGATTCT TTGCGATTGCGGAGTTGAAGCTCCCCTTGTAGCATCAGGGACACCATACAGTCATGGAAGAGTGTTTTATGGTTGTGGAT TGTACAAGGTATATGGCAAGAAGCAGTGCAGATTCTTTAAATGGGTTGACGAAGTCGATGGTCATGCAGTGGAAGATAGG GAAGACAAGGTTGTTCGGGCATTGACAAGAAAAATTGTGGAAATGAGGAAGACACAAGGGCAATTGCAAATGTTTTTAGC AATTGCCATATTTGCATTGTTGTTTGTACTGTTCTTGTATGTAACCAAGTAG
Protein sequence (LotjaGi4g1v0245000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGGFSEGSSTCSGSGRRLHRSKPLKILCDCGVEAPLVASGTPYSHGRVFYGCGLYKVYGKKQCRFFKWVDEVDGHAVEDR EDKVVRALTRKIVEMRKTQGQLQMFLAIAIFALLFVLFLYVTK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 103 | 103 | - | – | |
| PANTHER | 7 | 103 | 97 | 1.0E-13 | – | |
| PANTHER | 7 | 103 | 97 | 1.0E-13 | – | |
| Pfam | 27 | 71 | 45 | 1.7E-8 | ||
| TMHMM | 100 | 122 | 23 | - | – | |
| Phobius | 104 | 121 | 18 | - | – | |
| Phobius | 122 | 123 | 2 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of LotjaGi4g1v0245000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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