Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

PF06839

Source: Pfam

Description

GRF zinc finger

Associated GO terms

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0008270
Molecular function Zinc ion binding Interacting selectively and non-covalently with zinc (Zn) ions.
Subterm of

Associated Lotus transcripts 45

Transcript Name Description Predicted domains Domain count
Lj0g3v0047989.1
– Zinc finger homeodomain protein [Medicago truncatula] gi|357477555|ref|XP_003609063.1|
Domains
8
Lj0g3v0081109.1
– DNA topoisomerase III alpha [Pseudozyma antarctica T]-34] gi|443894350|dbj|GAC71698.1|
Domains
6
Lj0g3v0118659.1
– DNA topoisomerase 3-beta [Trichosporon asahii var]. asahii CBS 2479] gi|401881458|gb|EJT45758.1|
Domains
3
Lj0g3v0118699.1
– RING finger protein [Medicago truncatula] gi|357507629|ref|XP_003624103.1|
Domains
3
Lj0g3v0199589.1
– GRF zinc finger-containing protein-like protein [Gladiolus grandiflorus] gi|304273293|gb|ADM18310.1|
Domains
2
Lj0g3v0227049.1
– Zinc finger homeodomain protein [Medicago truncatula] gi|357477555|ref|XP_003609063.1|
Domains
9
Lj0g3v0243439.1
– GRF zinc finger containing protein [Medicago truncatula] gi|357513263|ref|XP_003626920.1|
Domains
7
Lj0g3v0255809.1
– GRF zinc finger containing protein [Medicago truncatula] gi|357483579|ref|XP_003612076.1|
Domains
6
Lj0g3v0293639.1
– GRF zinc finger containing protein [Medicago truncatula] gi|357459337|ref|XP_003599949.1|
Domains
6
Lj0g3v0294119.1
– Ribonuclease H [Banana streak virus] gi|219816428|gb|ACL37065.1|
Domains
7
Lj0g3v0309849.1
– GRF zinc finger containing protein [Medicago truncatula] gi|357459337|ref|XP_003599949.1|
Domains
6
Lj1g3v0414990.1
– GRF zinc finger containing protein [Medicago truncatula] gi|357513263|ref|XP_003626920.1|
Domains
7
Lj1g3v5060950.1
– GRF zinc finger containing protein [Medicago truncatula] gi|357513263|ref|XP_003626920.1|
Domains
7
Lj2g3v0276610.1
– ZYRO0C13222p [Zygosaccharomyces rouxii] gi|254580459|ref|XP_002496215.1|
Domains
3
Lj4g3v1037650.1
– PREDICTED: DNA-(apurinic or apyrimidinic site) lyase 2-like [Glycine max] gi|356502118|ref|XP_003519868.1|
Domains
17
Lj4g3v1037650.2
– PREDICTED: DNA-(apurinic or apyrimidinic site) lyase 2-like [Glycine max] gi|356502118|ref|XP_003519868.1|
Domains
11
Lj5g3v1014670.1
– GRF zinc finger containing protein [Brassica oleracea] gi|89257458|gb|ABD64950.1|
Domains
6
LotjaGi1g1v0093100_LC.1
– DNA topoisomerase; TAIR: AT1G52603.1 GRF zinc finger protein; Swiss-Prot: sp|Q9LVP1|TOP3A_ARATH DNA topoisomerase 3-alpha; TrEMBL-Plants: tr|A0A1J6JGG4|A0A1J6JGG4_NICAT Uncharacterized protein; Found in the gene: LotjaGi1g1v0093100_LC
Domains
8
LotjaGi1g1v0104500_LC.1
– GRF zinc finger protein; TAIR: AT5G15690.1 zinc ion binding protein; Swiss-Prot: sp|Q9ZS96|Y4478_ARATH Uncharacterized protein At4g04775; TrEMBL-Plants: tr|A0A0L9VN44|A0A0L9VN44_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0104500_LC
Domains
9
LotjaGi1g1v0221400_LC.1
– DNA topoisomerase; TAIR: AT5G13920.1 GRF zinc finger / Zinc knuckle protein; Swiss-Prot: sp|C7J0A2|TOP3A_ORYSJ DNA topoisomerase 3-alpha; TrEMBL-Plants: tr|A0A067F933|A0A067F933_CITSI Uncharacterized protein; Found in the gene: LotjaGi1g1v0221400_LC
Domains
7
LotjaGi1g1v0321800.1
– DNA topoisomerase; TAIR: AT5G63920.1 topoisomerase 3alpha; Swiss-Prot: sp|Q9LVP1|TOP3A_ARATH DNA topoisomerase 3-alpha; TrEMBL-Plants: tr|A0A0S3RFA9|A0A0S3RFA9_PHAAN DNA topoisomerase; Found in the gene: LotjaGi1g1v0321800
Domains
40
LotjaGi1g1v0354600.1
– GRF zinc finger protein; TAIR: AT1G52603.1 GRF zinc finger protein; Swiss-Prot: sp|P38207|APN2_YEAST DNA-(apurinic or apyrimidinic site) lyase 2; TrEMBL-Plants: tr|A0A072VL81|A0A072VL81_MEDTR GRF zinc finger protein; Found in the gene: LotjaGi1g1v0354600
Domains
9
LotjaGi1g1v0435900_LC.1
– DNA topoisomerase; TAIR: AT5G15690.1 zinc ion binding protein; Swiss-Prot: sp|Q9ZS96|Y4478_ARATH Uncharacterized protein At4g04775; TrEMBL-Plants: tr|A0A072VLE9|A0A072VLE9_MEDTR GRF zinc finger protein; Found in the gene: LotjaGi1g1v0435900_LC
Domains
5
LotjaGi1g1v0562600_LC.1
– GRF zinc finger protein; TAIR: AT5G13920.2 GRF zinc finger / Zinc knuckle protein; Swiss-Prot: sp|P38207|APN2_YEAST DNA-(apurinic or apyrimidinic site) lyase 2; TrEMBL-Plants: tr|A0A0L9U2U0|A0A0L9U2U0_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0562600_LC
Domains
10
LotjaGi1g1v0635200_LC.1
– DNA topoisomerase; TAIR: AT5G13920.1 GRF zinc finger / Zinc knuckle protein; Swiss-Prot: sp|Q9LVP1|TOP3A_ARATH DNA topoisomerase 3-alpha; TrEMBL-Plants: tr|A0A0S3RM16|A0A0S3RM16_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0635200_LC
Domains
9
LotjaGi1g1v0635400.1
– DNA topoisomerase; TAIR: AT5G13920.1 GRF zinc finger / Zinc knuckle protein; Swiss-Prot: sp|Q9LVP1|TOP3A_ARATH DNA topoisomerase 3-alpha; TrEMBL-Plants: tr|A0A151R6F5|A0A151R6F5_CAJCA Uncharacterized protein; Found in the gene: LotjaGi1g1v0635400
Domains
9
LotjaGi2g1v0216500_LC.1
– DNA topoisomerase; TAIR: AT3G42860.1 zinc knuckle (CCHC-type) family protein; Swiss-Prot: sp|Q9LP10|Y1920_ARATH Uncharacterized protein At1g43920, Chloroplastic; TrEMBL-Plants: tr|A0A0L9VN44|A0A0L9VN44_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0216500_LC
Domains
9
LotjaGi2g1v0232000_LC.1
– DNA topoisomerase; TAIR: AT5G13920.1 GRF zinc finger / Zinc knuckle protein; Swiss-Prot: sp|Q9LVP1|TOP3A_ARATH DNA topoisomerase 3-alpha; TrEMBL-Plants: tr|A0A151R6F5|A0A151R6F5_CAJCA Uncharacterized protein; Found in the gene: LotjaGi2g1v0232000_LC
Domains
8
LotjaGi2g1v0321100_LC.1
– GRF zinc finger protein; TAIR: AT2G07505.1 zinc ion binding protein; Swiss-Prot: sp|P38207|APN2_YEAST DNA-(apurinic or apyrimidinic site) lyase 2; TrEMBL-Plants: tr|A0A0L9VSM5|A0A0L9VSM5_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0321100_LC
Domains
9
LotjaGi3g1v0112000_LC.1
– GRF zinc finger protein; TAIR: AT1G52603.1 GRF zinc finger protein; Swiss-Prot: sp|Q9NG98|TOP3A_DROME DNA topoisomerase 3-alpha; TrEMBL-Plants: tr|A0A0B2QQH9|A0A0B2QQH9_GLYSO Uncharacterized protein; Found in the gene: LotjaGi3g1v0112000_LC
Domains
5
LotjaGi3g1v0173900_LC.1
– DNA topoisomerase; TAIR: AT5G63920.1 topoisomerase 3alpha; Swiss-Prot: sp|Q9LVP1|TOP3A_ARATH DNA topoisomerase 3-alpha; TrEMBL-Plants: tr|A0A1J6JGG4|A0A1J6JGG4_NICAT Uncharacterized protein; Found in the gene: LotjaGi3g1v0173900_LC
Domains
6
LotjaGi3g1v0208400_LC.1
– GRF zinc finger protein; TAIR: AT1G52603.1 GRF zinc finger protein; Swiss-Prot: sp|Q9ZS96|Y4478_ARATH Uncharacterized protein At4g04775; TrEMBL-Plants: tr|A0A0B2QQH9|A0A0B2QQH9_GLYSO Uncharacterized protein; Found in the gene: LotjaGi3g1v0208400_LC
Domains
5
LotjaGi3g1v0257300_LC.1
– GRF zinc finger family protein; TAIR: AT2G27170.1 Structural maintenance of chromosomes (SMC) family protein; Swiss-Prot: sp|Q56YN8|SMC3_ARATH Structural maintenance of chromosomes protein 3; TrEMBL-Plants: tr|A0A0D9YAQ7|A0A0D9YAQ7_9ORYZ Uncharacterized protein; Found in the gene: LotjaGi3g1v0257300_LC
Domains
9
LotjaGi3g1v0285000_LC.2
– DNA topoisomerase; TAIR: AT1G52603.1 GRF zinc finger protein; Swiss-Prot: sp|Q9LVP1|TOP3A_ARATH DNA topoisomerase 3-alpha; TrEMBL-Plants: tr|A0A1J6JGG4|A0A1J6JGG4_NICAT Uncharacterized protein; Found in the gene: LotjaGi3g1v0285000_LC
Domains
8
LotjaGi3g1v0285000_LC.4
– DNA topoisomerase; TAIR: AT1G52603.1 GRF zinc finger protein; Swiss-Prot: sp|Q9LVP1|TOP3A_ARATH DNA topoisomerase 3-alpha; TrEMBL-Plants: tr|A0A1J6JGG4|A0A1J6JGG4_NICAT Uncharacterized protein; Found in the gene: LotjaGi3g1v0285000_LC
Domains
8
LotjaGi3g1v0410000_LC.1
– DNA topoisomerase; TAIR: AT3G42860.1 zinc knuckle (CCHC-type) family protein; Swiss-Prot: sp|Q9ZS96|Y4478_ARATH Uncharacterized protein At4g04775; TrEMBL-Plants: tr|A0A0L9VDF3|A0A0L9VDF3_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0410000_LC
Domains
6
LotjaGi4g1v0128100.1
– DNA-(apurinic or apyrimidinic site) lyase; TAIR: AT4G36050.3 endonuclease/exonuclease/phosphatase family protein; Swiss-Prot: sp|F4JNY0|APE2_ARATH DNA-(apurinic or apyrimidinic site) lyase 2; TrEMBL-Plants: tr|A0A151QUY4|A0A151QUY4_CAJCA DNA-(apurinic or apyrimidinic site) lyase; Found in the gene: LotjaGi4g1v0128100
Domains
13
LotjaGi4g1v0143500_LC.1
– DNA topoisomerase; TAIR: AT2G37125.1 GRF zinc finger protein; Swiss-Prot: sp|P38207|APN2_YEAST DNA-(apurinic or apyrimidinic site) lyase 2; TrEMBL-Plants: tr|A0A0L9U2L5|A0A0L9U2L5_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0143500_LC
Domains
9
LotjaGi4g1v0211500_LC.1
– DNA topoisomerase; TAIR: AT5G15690.1 zinc ion binding protein; Swiss-Prot: sp|Q9ZS96|Y4478_ARATH Uncharacterized protein At4g04775; TrEMBL-Plants: tr|A0A0L9VN44|A0A0L9VN44_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0211500_LC
Domains
8
LotjaGi4g1v0245000.1
– GRF zinc finger protein; TAIR: AT2G06265.1 zinc ion-binding protein; Swiss-Prot: sp|A8K979|ERI2_HUMAN ERI1 exoribonuclease 2; TrEMBL-Plants: tr|A0A072V5S4|A0A072V5S4_MEDTR GRF zinc finger protein; Found in the gene: LotjaGi4g1v0245000
Domains
8
LotjaGi4g1v0370800_LC.1
– DNA topoisomerase; TAIR: AT4G04775.1 zinc ion binding protein; Swiss-Prot: sp|Q9ZS96|Y4478_ARATH Uncharacterized protein At4g04775; TrEMBL-Plants: tr|A0A0D3BGR5|A0A0D3BGR5_BRAOL Uncharacterized protein; Found in the gene: LotjaGi4g1v0370800_LC
Domains
5
LotjaGi5g1v0283300.1
– GRF zinc finger protein; TAIR: AT1G52603.1 GRF zinc finger protein; Swiss-Prot: sp|P38207|APN2_YEAST DNA-(apurinic or apyrimidinic site) lyase 2; TrEMBL-Plants: tr|A0A072VL81|A0A072VL81_MEDTR GRF zinc finger protein; Found in the gene: LotjaGi5g1v0283300
Domains
9
LotjaGi6g1v0105800_LC.1
– DNA topoisomerase; TAIR: AT3G42860.1 zinc knuckle (CCHC-type) family protein; Swiss-Prot: sp|P38207|APN2_YEAST DNA-(apurinic or apyrimidinic site) lyase 2; TrEMBL-Plants: tr|A0A0L9VDF3|A0A0L9VDF3_PHAAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0105800_LC
Domains
3
LotjaGi6g1v0176400_LC.1
– DNA topoisomerase; TAIR: AT5G63920.1 topoisomerase 3alpha; Swiss-Prot: sp|Q9LVP1|TOP3A_ARATH DNA topoisomerase 3-alpha; TrEMBL-Plants: tr|A0A078CE87|A0A078CE87_BRANA BnaC09g25450D protein; Found in the gene: LotjaGi6g1v0176400_LC
Domains
8
LotjaGi6g1v0233000_LC.1
– DNA topoisomerase; TAIR: AT1G52603.1 GRF zinc finger protein; Swiss-Prot: sp|Q9LVP1|TOP3A_ARATH DNA topoisomerase 3-alpha; TrEMBL-Plants: tr|A0A1J6JGG4|A0A1J6JGG4_NICAT Uncharacterized protein; Found in the gene: LotjaGi6g1v0233000_LC
Domains
8

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain Source Observations Saturation (%)
TRANSMEMBRANE Phobius 1 2.22