Domain Predictions — View

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PTHR34222:SF23

Source: PANTHER

Description

No description is available for this domain.

Associated GO terms

Unable to find any GO terms for the transcript with the identifier.

Associated Lotus transcripts 6

Transcript	Name	Description	Predicted domains	Domain count
LotjaGi1g1v0018900_LC.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: AT5G48050.1 Copia-like polyprotein/retrotransposon; Swiss-Prot: sp\|P0ACL6\|GLCC_ECOL6 Glc operon transcriptional activator; TrEMBL-Plants: tr\|A0A151TTX5\|A0A151TTX5_CAJCA Uncharacterized protein; Found in the gene: LotjaGi1g1v0018900_LC	Domains Coil PF14223 PTHR34222 PTHR34222:SF23	5
LotjaGi1g1v0329400_LC.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: AT3G21000.1 Gag-Pol-related retrotransposon family protein; Swiss-Prot: sp\|Q65JJ2\|RASP_BACLD Zinc metalloprotease RasP; TrEMBL-Plants: tr\|A0A0B2SFD5\|A0A0B2SFD5_GLYSO Uncharacterized protein; Found in the gene: LotjaGi1g1v0329400_LC	Domains PF14223 PTHR34222 PTHR34222:SF23	4
LotjaGi1g1v0392800_LC.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: AT3G20980.1 Gag-Pol-related retrotransposon family protein; Swiss-Prot: sp\|P25601\|YCH5_YEAST Putative transposon Ty5-1 protein YCL075W; TrEMBL-Plants: tr\|A0A151SFK6\|A0A151SFK6_CAJCA Retrovirus-related Pol polyprotein from transposon TNT 1-94; Found in the gene: LotjaGi1g1v0392800_LC	Domains CYTOPLASMIC_DOMAIN Coil IPR036875 NON_CYTOPLASMIC_DOMAIN PF14223 PTHR34222 PTHR34222:SF23 SSF57756 TRANSMEMBRANE mobidb-lite	10
LotjaGi1g1v0495100_LC.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: AT5G48050.1 Copia-like polyprotein/retrotransposon; Swiss-Prot: sp\|P14733\|LMNB1_MOUSE Lamin-B1; TrEMBL-Plants: tr\|A0A151SDU3\|A0A151SDU3_CAJCA Uncharacterized protein; Found in the gene: LotjaGi1g1v0495100_LC	Domains PF14223 PTHR34222 PTHR34222:SF23	4
LotjaGi1g1v0754200_LC.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: AT3G21000.1 Gag-Pol-related retrotransposon family protein; Swiss-Prot: sp\|B9DTE3\|PNP_STRU0 Polyribonucleotide nucleotidyltransferase; TrEMBL-Plants: tr\|A0A151SFK6\|A0A151SFK6_CAJCA Retrovirus-related Pol polyprotein from transposon TNT 1-94; Found in the gene: LotjaGi1g1v0754200_LC	Domains Coil NON_CYTOPLASMIC_DOMAIN PF14223 PTHR34222 PTHR34222:SF23 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION mobidb-lite	11
LotjaGi4g1v0427800_LC.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: AT3G21000.1 Gag-Pol-related retrotransposon family protein; Swiss-Prot: sp\|Q5HNG0\|DAAA_STAEQ D-alanine aminotransferase; TrEMBL-Plants: tr\|A0A151SFK6\|A0A151SFK6_CAJCA Retrovirus-related Pol polyprotein from transposon TNT 1-94; Found in the gene: LotjaGi4g1v0427800_LC	Domains Coil PF14223 PTHR34222 PTHR34222:SF23 mobidb-lite	6

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain	Source	Observations	Saturation (%)
mobidb-lite	MobiDBLite	1	16.67