Domain Predictions — View

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SSF47933

Source: SUPERFAMILY

Description

No description is available for this domain.

Associated GO terms

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0005783 View details of GO:0005783 AmiGO InterPro QuickGO	Cellular component	Endoplasmic reticulum	The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached).	Subterm of GO:0043231 GO:0044444 Part of GO:0012505

Associated Lotus transcripts 4

Transcript	Name	Description	Predicted domains	Domain count
Lj1g3v4779530.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: probable protein disulfide-isomerase A6-like isoform 1 [Glycine max] gi\|356505777\|ref\|XP_003521666.1\|	Domains Coil G3DSA:1.20.1150.12 G3DSA:3.40.30.10 IPR005788 IPR011679 IPR012336 IPR013766 IPR017937 NON_CYTOPLASMIC_DOMAIN PF00085 PF07749 PR00421 PS00194 PS51352 PTHR18929 PTHR18929:SF91 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION SSF47933 SSF52833 SignalP-TM_GRAM_POSITIVE SignalP-noTM_EUK SignalP-noTM_GRAM_NEGATIVE TIGR01126 cd00238 cd02998	28
Lj5g3v1601820.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Protein disulfide isomerase-like protein precursor [Glycine max] gi\|351724739\|ref\|NP_001236300.1\|	Domains G3DSA:1.20.1150.12 G3DSA:3.40.30.10 IPR005788 IPR011679 IPR012336 IPR013766 IPR017937 NON_CYTOPLASMIC_DOMAIN PF00085 PF07749 PR00421 PS00194 PS51352 PTHR18929 PTHR18929:SF91 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION SSF47933 SSF52833 SignalP-noTM_EUK SignalP-noTM_GRAM_NEGATIVE TIGR01126 TMhelix cd00238 cd02998	27
LotjaGi1g1v0747800.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Protein disulfide isomerase-like protein; TAIR: AT2G47470.1 thioredoxin family protein; Swiss-Prot: sp\|P38661\|PDIA6_MEDSA Probable protein disulfide-isomerase A6; TrEMBL-Plants: tr\|A0A0L9U914\|A0A0L9U914_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0747800	Domains Coil G3DSA:1.20.1150.12 G3DSA:3.40.30.10 IPR005788 IPR011679 IPR013766 IPR017937 IPR036249 IPR036356 NON_CYTOPLASMIC_DOMAIN PF00085 PF07749 PR00421 PS00194 PS51352 PTHR45672 PTHR45672:SF6 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION SSF47933 SSF52833 SignalP-TM SignalP-noTM TIGR01126 cd00238 cd02998	28
LotjaGi5g1v0246900.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Protein disulfide isomerase-like protein; TAIR: AT2G47470.1 thioredoxin family protein; Swiss-Prot: sp\|P38661\|PDIA6_MEDSA Probable protein disulfide-isomerase A6; TrEMBL-Plants: tr\|I3SWG3\|I3SWG3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0246900	Domains G3DSA:1.20.1150.12 G3DSA:3.40.30.10 IPR005788 IPR011679 IPR013766 IPR017937 IPR036249 IPR036356 NON_CYTOPLASMIC_DOMAIN PF00085 PF07749 PR00421 PS00194 PS51352 PTHR45672 PTHR45672:SF6 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION SSF47933 SSF52833 SignalP-noTM TIGR01126 TMhelix cd00238 cd02998	27

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain	Source	Observations	Saturation (%)
cd02998	CDD	1	25.00