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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0747800 |
| Transcript ID | LotjaGi1g1v0747800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Protein disulfide isomerase-like protein; TAIR: AT2G47470.1 thioredoxin family protein; Swiss-Prot: sp|P38661|PDIA6_MEDSA Probable protein disulfide-isomerase A6; TrEMBL-Plants: tr|A0A0L9U914|A0A0L9U914_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0747800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:132044975..132048978) extracted from Lotus japonicus Gifu genome v1.2.
GTCATTTTATTTTACTTAAACAACTATTCTTTGTCCTCTATATATCGTAAAGGATAAGCTCACAAATGTTGTTCAATGGC AACCGTTCAACAGTTGTATTCGTCGTCAAACTCTCCACTACCTTCAGAAGCGAAACTAAGCAGCAATCTTCAACACCCTT CGTCTTCTCCTCCTCCTCTAGAACCACCACCACCATCACCCATCTTTCGTCAGAGTTCCCACTATCAATGCTTAACTTAT CGCAACACTCATCAGACAAAACACTCGAGAACCATCCATATGGCGACACAGGTACCCCATCTTTGGATAAGCATAACAAT CTAAAACCCTGACTGTGCAACACTTTGAAGATTGTTCATTATGTTTGTTATGAAACTCTCCACTTCATCCAGAACCGAAA GTGAGTGACAATCCTTAATGCTCTCATTTTTACCTTCTTCTTCTCCTCTATCATCTCTCGTCCTAGAACTTTCCACATCG CTTCTTTTCACCCCTCGCGAGCTAGGAATCCACAAATGACGCATGTGTAGAAAAGATCCAACAAAGCCTCTTCTATAATT TTAAGTAGCTTCTTTTATCAAACAATCAATCATCAATCATAATTGTTCATTAAAAAAAAAACTAACAGTTATGAAAAGTG AAAGAGGTAAGACATGAAATAAAAGTATGTTTAATTTTTCAATAGAGTATTTGCATAGTTTTCTTTTCGAGTAAATAAAA AAAAGGTCAAAATTAACATAAAACAAAAATAAATAAAAAACTGGACAAACGCAAATAGACACTGAGACCAAAATCCAAGA AACAAGGAAAAGGAAGAAGAAAAAACACAGAGTAGTGATCGGAGGAAAAGGATCCCTTGAACGGTTTTCCATTTTGATTT GCAACAATGTGGAGCTCGAGCACGAGTACCTGTACGACGATAATGATATGTGTCGGAGCCATGGCTCTGGCATTTCTCTC AACAACAGCTTCAGCAGACGATGTTGTTGCACTCACAGAGGACACATTCGGGAAAGAGGTTGGTCAGGATCGTGGCGCTC TCATCGAGTTTTACGCTCCCTGGTAACATCAATCTCAATTCTTCCTCATCATTCATCCCATGCAGTTCCTCTTGAATCCT TTATTGGATTCGATTGCACTTTCTGTCATCATGCATGTAGATTTGATGACAATGTGTGTTGTTTTCCATGTCAGGTGTGG ACATTGTAAAAAGCTTGCACCTGAATATGAAAAACTTGCAACTAGTTTTAGAAAAACCAAGTCCGTTTTGATTGCCAAGG TTAGTCACTGTCTGTCATTGTTCTCGATCTTTTAACGTATTCAACTGTTATTGTCATTGTCATGTTCTTCAAAATGGCCT CTTTTTTTTGCCAATGATTGGGGCTTCACATGTTTGTAGGTGGACTGTGATGAACACAAAAGCGTTTGCAATAAATATGG GGTTTCTGGGTACCCCACAATTCAATGGTTTCCTCAGGGATCTCTAGAGCCAAAGAAGTAAGCTTTATTTATGCCCATTT CCTTCACTTTCAATCAATTGTTATTAGTTTTACTATAGAGAAAATTTCCCCTGTTCTTAACGTGTTGCTATAGTTTTCGT TGCATTTGTTATCCACAGCTGAACAAATTTGGTGTTATTTAGGTACGAGGGGGCACGAACTGCAGAAGCCCTTACTGCTT TTGTGAACATTGAAGGAGGTATTTAAGTGAATTGGTCTTTTGCTCTTCAGTGAATTGCAGGGTTGTTATGTTAGTTTTTT TGTGTTTTTTTTTTTTTTACTCTGCTGTGCTTATTTGCATGATGTCAATATGAGTATTCTAAAACAACTTTACTGATCTA TATGCTAATCTCGGTACTGAATGCTTAGCAATACAATTTAACCATCCCATATTGTGTTCCTCTTGTATTGCCATCCTGTT CAGTGTCTCTATTGTAAATATGCTGGCTTTGTCATCCATTTGTTCCTCTGCTTGGCATTTTGAATGTTTATCAACTTAAT TCATCTGGTATTTCTTTAAATAGTATTCAGATAATTTATCATTGGTATCAAATATATTGTTAATGTAGGTACCAATGTCA AGTTTGCTTCTGTTCCATCTAGTGTGGTAGTTCTCTCCTTATTTAACTTTGATAAGGTTGTCTTGGATGAAACAAAAGAT GTTTTAGTGGAGTTCTATGCACCGTGGTAAGTGTAGATTGATCATCAGAAGATCTACCAAAACCTTATTATATGGCGACT TTTATTTTAAAAACATTTTCATTTATGATATATTTTTCTTGATAAATTTGACTATGACTTCCAGGTGTGGTCATTGTCAG GCCCTTGCCCCTGTAAGGATGTTCTCTCTTGTTGCACTTCTACCATAGTTGTAGTCATAGGCTCATAGCTTAATGAGTTT CACTTTCACCTGCTTGGGACTACATAGGTCAATCCTAAAAGTTTATACTCTTTCTTCAGACTTATGAAAAGGTTGCTGCA GCATTTAAATTGGAGGAGGATGTAGTTATAGCTAATGTTGATACTGATACTTACAAGGATTTGGCCGAGAAGTGAGTGCA GCCAGTAACAATTTTCCATTTTTCTTCAAATTAAACTAGGTTGATATCTTATTTAAGAGCATTTGCCTAATTTGAAAAGT TTGGTAATGTAGATATGCTGTTAGTGGCTATCCCACACTGAAGTTTTTCCCAAAAAGCAATAAAGCAGGTGAAGATTATG GCGGTGGTCGTGAGTTGGATGATTTTGTAAATTTCATCAACGAGAAATGTGGCACCAATCGTGATGGGAAGGGGCAACTT ACTGCTAAAGTTAGTTATGCAGTGCATATTTACAAGTAATAAGAGACCAAAATAATATACTTTATTGATATCTGAATGGC TTAATTCTTCTTGCTTTAGGCTGGTATAATACCATCTCTGGATGACTTGGTGAAGGAGTTTGTAAGTGCTGATGATAATG AGAAGAAGGCAGTGTTTTCCCAGCTTGAGGAGGAAGTTAAGAAGCTTAAGGGTTCTGCTGCAAGGTTTGAACTTTGAACT GTTTTATGGTTCTTTTATGTTTGGTTTGCTTAAATTTTATTTTGAAGTGGGTTATTGTGATTTGAGAAGCCCTAACTCCT CATCTACAAGCCTTGGTTTATTGTAGAGATTAATGTGCTTGATTTTTTGTTATGTCTCCTTTTGTTTGCCCCAGATATGG AAACCTATACTTAAAACTTGCTAAGAACAGTATGGAAAAGGGTGCAGACTATGCAAAGAATGAGATTCAACGTCTTGAGC GCTTACTTGAGAAGGTAGTTTATTACATCTTTCATGTTTAATATGATAAATATATAAGTAGCTAATATGCTAACTGTACT GAACATCAAACAAGAACACCATCTTATCAATGAAGATATTTTCTACTATACTGTGAAGATATTTCAAATGATGCAACTGT TTTGTATATTTGAAGGTAAGAGTCTGAGTGATGGCGATATGTCTAAACAGTATGAGTAAATCAATTAGCAAAAATCATTC AATGGTTTGGCCTATGAAAAGAAATAACATTTAGCAGCTATGGATTGGCTAACCAAAGAAATAGTTTTCAATTGCAAATG TTCTTTTATGAACTGGCATATAAACTTTTAGCTTTCATTTTTTATGTTAATGTCAATAACTAATGTTTGAAAGTTTTCAT TCTTTTGATGCAGTCAATCAACCCAGTAAAGGCTGATGAATTCACTCTCAAGAAGAACATCTTATCTACCTTTACTTGAT ATTATGCTGATGGAGGAGTCATTGCATTCAGTTCTGGGGGATGACATGTTTTGTAACTCCTAAATTTGTAGGAGTTACAA CCCTGTCTTTTCCGCATAATTTTTGCACTGGTCATGTATTATATCTTAATTAAAGCAGAAAATATATTTTTGTATAAGAA AATTATATACGTATAAGGAATTTAGAATGACTTCAGGTTCATGATTGAAATGGAGATTATTGTAGCTTTTTCCTTGTGTT ACCT
CDS sequence (LotjaGi1g1v0747800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTGGAGCTCGAGCACGAGTACCTGTACGACGATAATGATATGTGTCGGAGCCATGGCTCTGGCATTTCTCTCAACAAC AGCTTCAGCAGACGATGTTGTTGCACTCACAGAGGACACATTCGGGAAAGAGGTTGGTCAGGATCGTGGCGCTCTCATCG AGTTTTACGCTCCCTGGTGTGGACATTGTAAAAAGCTTGCACCTGAATATGAAAAACTTGCAACTAGTTTTAGAAAAACC AAGTCCGTTTTGATTGCCAAGGTGGACTGTGATGAACACAAAAGCGTTTGCAATAAATATGGGGTTTCTGGGTACCCCAC AATTCAATGGTTTCCTCAGGGATCTCTAGAGCCAAAGAAGTACGAGGGGGCACGAACTGCAGAAGCCCTTACTGCTTTTG TGAACATTGAAGGAGGTACCAATGTCAAGTTTGCTTCTGTTCCATCTAGTGTGGTAGTTCTCTCCTTATTTAACTTTGAT AAGGTTGTCTTGGATGAAACAAAAGATGTTTTAGTGGAGTTCTATGCACCGTGGTGTGGTCATTGTCAGGCCCTTGCCCC TACTTATGAAAAGGTTGCTGCAGCATTTAAATTGGAGGAGGATGTAGTTATAGCTAATGTTGATACTGATACTTACAAGG ATTTGGCCGAGAAATATGCTGTTAGTGGCTATCCCACACTGAAGTTTTTCCCAAAAAGCAATAAAGCAGGTGAAGATTAT GGCGGTGGTCGTGAGTTGGATGATTTTGTAAATTTCATCAACGAGAAATGTGGCACCAATCGTGATGGGAAGGGGCAACT TACTGCTAAAGCTGGTATAATACCATCTCTGGATGACTTGGTGAAGGAGTTTGTAAGTGCTGATGATAATGAGAAGAAGG CAGTGTTTTCCCAGCTTGAGGAGGAAGTTAAGAAGCTTAAGGGTTCTGCTGCAAGATATGGAAACCTATACTTAAAACTT GCTAAGAACAGTATGGAAAAGGGTGCAGACTATGCAAAGAATGAGATTCAACGTCTTGAGCGCTTACTTGAGAAGTCAAT CAACCCAGTAAAGGCTGATGAATTCACTCTCAAGAAGAACATCTTATCTACCTTTACTTGA
Protein sequence (LotjaGi1g1v0747800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MWSSSTSTCTTIMICVGAMALAFLSTTASADDVVALTEDTFGKEVGQDRGALIEFYAPWCGHCKKLAPEYEKLATSFRKT KSVLIAKVDCDEHKSVCNKYGVSGYPTIQWFPQGSLEPKKYEGARTAEALTAFVNIEGGTNVKFASVPSSVVVLSLFNFD KVVLDETKDVLVEFYAPWCGHCQALAPTYEKVAAAFKLEEDVVIANVDTDTYKDLAEKYAVSGYPTLKFFPKSNKAGEDY GGGRELDDFVNFINEKCGTNRDGKGQLTAKAGIIPSLDDLVKEFVSADDNEKKAVFSQLEEEVKKLKGSAARYGNLYLKL AKNSMEKGADYAKNEIQRLERLLEKSINPVKADEFTLKKNILSTFT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_NEGATIVE | 1 | 30 | 30 | - | – | |
| Phobius | 1 | 30 | 30 | - | – | |
| Phobius | 1 | 13 | 13 | - | – | |
| SignalP_EUK | 1 | 30 | 30 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 30 | 30 | - | – | |
| Phobius | 14 | 25 | 12 | - | – | |
| PANTHER | 14 | 365 | 352 | 1.1E-185 | – | |
| PANTHER | 14 | 365 | 352 | 1.1E-185 | – | |
| Gene3D | 24 | 142 | 119 | 5.6E-39 | ||
| ProSiteProfiles | 24 | 139 | 116 | 16.923 | ||
| Phobius | 26 | 30 | 5 | - | – | |
| SUPERFAMILY | 31 | 135 | 105 | 3.21E-36 | ||
| Phobius | 31 | 366 | 336 | - | – | |
| CDD | 32 | 134 | 103 | 1.56464E-53 | – | |
| Pfam | 33 | 134 | 102 | 2.2E-32 | ||
| TIGRFAM | 36 | 135 | 100 | 7.5E-39 | ||
| ProSitePatterns | 52 | 70 | 19 | - | ||
| Gene3D | 143 | 256 | 114 | 2.7E-39 | ||
| ProSiteProfiles | 145 | 258 | 114 | 14.679 | ||
| SUPERFAMILY | 148 | 259 | 112 | 3.55E-36 | ||
| Pfam | 151 | 254 | 104 | 8.3E-32 | ||
| TIGRFAM | 158 | 256 | 99 | 1.2E-38 | ||
| CDD | 158 | 253 | 96 | 8.12079E-53 | – | |
| PRINTS | 170 | 178 | 9 | 2.0E-7 | – | |
| ProSitePatterns | 171 | 189 | 19 | - | ||
| PRINTS | 178 | 187 | 10 | 2.0E-7 | – | |
| PRINTS | 220 | 231 | 12 | 2.0E-7 | – | |
| Gene3D | 271 | 366 | 96 | 7.8E-22 | ||
| SUPERFAMILY | 271 | 365 | 95 | 2.35E-29 | ||
| Pfam | 272 | 365 | 94 | 3.0E-23 | ||
| CDD | 274 | 365 | 92 | 7.87924E-32 | ||
| Coils | 322 | 342 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein disulfide isomerase activity | Catalysis of the rearrangement of both intrachain and interchain disulfide bonds in proteins. | ||
| Cellular component | Endoplasmic reticulum | The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached). | ||
| Biological process | Cell redox homeostasis | Any process that maintains the redox environment of a cell or compartment within a cell. |
Expression pattern of LotjaGi1g1v0747800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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