Domain Predictions — View

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cd13893

Source: CDD

Description

CuRO_3_AAO

Associated GO terms

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0005507 View details of GO:0005507 AmiGO InterPro QuickGO	Molecular function	Copper ion binding	Interacting selectively and non-covalently with copper (Cu) ions.	Subterm of GO:0046914

Associated Lotus transcripts 6

Transcript	Name	Description	Predicted domains	Domain count
Lj2g3v2136010.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Ascorbate oxidase [Lotus japonicus] gi\|400001046\|gb\|AFP65861.1\|	Domains G3DSA:2.60.40.420 IPR001117 IPR002355 IPR008972 IPR011706 IPR017760 IPR033138 PF00394 PF07731 PS00079 PS00080 PTHR11709 PTHR11709:SF97 SSF49503 TIGR03388 cd13893	16
Lj4g3v2817870.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: L-ascorbate oxidase-like [Cicer arietinum] gi\|502140076\|ref\|XP_004504046.1\|	Domains G3DSA:2.60.40.420 IPR001117 IPR002355 IPR008972 IPR011706 IPR011707 IPR017760 IPR033138 NON_CYTOPLASMIC_DOMAIN PF00394 PF07731 PF07732 PS00079 PS00080 PTHR11709 PTHR11709:SF28 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION SSF49503 TIGR03388 TMhelix cd13893	24
Lj6g3v1028660.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: L-ascorbate oxidase [Glycine max] gi\|356575058\|ref\|XP_003555659.1\|	Domains G3DSA:2.60.40.420 IPR001117 IPR002355 IPR008972 IPR011706 IPR011707 IPR017760 IPR033138 NON_CYTOPLASMIC_DOMAIN PF00394 PF07731 PF07732 PS00079 PS00080 PTHR11709 PTHR11709:SF97 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION SSF49503 SignalP-noTM_EUK TIGR03388 cd13893	24
LotjaGi1g1v0133700.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	L-ascorbate oxidase; TAIR: AT5G21105.1 Plant L-ascorbate oxidase; Swiss-Prot: sp\|P14133\|ASO_CUCSA L-ascorbate oxidase; TrEMBL-Plants: tr\|J7GBJ3\|J7GBJ3_LOTJA Ascorbate oxidase; Found in the gene: LotjaGi1g1v0133700	Domains G3DSA:2.60.40.420 IPR001117 IPR002355 IPR008972 IPR011706 IPR017760 IPR033138 IPR034267 PF00394 PF07731 PS00079 PS00080 PTHR11709 PTHR11709:SF310 SSF49503 TIGR03388 cd13893	17
LotjaGi4g1v0400500.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	L-ascorbate oxidase; TAIR: AT4G39830.1 Cupredoxin superfamily protein; Swiss-Prot: sp\|P24792\|ASO_CUCMA L-ascorbate oxidase; TrEMBL-Plants: tr\|A0A0B2S1B6\|A0A0B2S1B6_GLYSO L-ascorbate oxidase; Found in the gene: LotjaGi4g1v0400500	Domains G3DSA:2.60.40.420 IPR001117 IPR002355 IPR008972 IPR011706 IPR011707 IPR017760 IPR033138 IPR034259 IPR034267 NON_CYTOPLASMIC_DOMAIN PF00394 PF07731 PF07732 PS00079 PS00080 PTHR11709 PTHR11709:SF237 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION SSF49503 TIGR03388 TMhelix cd13845 cd13893	27
LotjaGi6g1v0191100.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	L-ascorbate oxidase; TAIR: AT5G21105.1 Plant L-ascorbate oxidase; Swiss-Prot: sp\|Q40588\|ASO_TOBAC L-ascorbate oxidase; TrEMBL-Plants: tr\|A0A0B2RL59\|A0A0B2RL59_GLYSO L-ascorbate oxidase; Found in the gene: LotjaGi6g1v0191100	Domains G3DSA:2.60.40.420 IPR001117 IPR002355 IPR008972 IPR011706 IPR011707 IPR017760 IPR033138 IPR034259 IPR034267 NON_CYTOPLASMIC_DOMAIN PF00394 PF07731 PF07732 PS00079 PS00080 PTHR11709 PTHR11709:SF310 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION SSF49503 SignalP-noTM TIGR03388 cd13845 cd13893	27

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain	Source	Observations	Saturation (%)
cd13893	CDD	1	16.67