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IPR002355 is a Multicopper oxidase, copper-binding site.
<p>The entry represents a conserved region containing the Cu-binding site found in multicopper oxidases.</p> <p>Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water [[cite:PUB00035913]]. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [[cite:PUB00001382], [cite:PUB00001602]]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a β-sandwich consisting of 7 strands in 2 β-sheets, arranged in a Greek-key β-barrel [[cite:PUB00011817]]. Multicopper oxidases include:</p> <ul> <li>Ceruloplasmin ([ec:1.16.3.1]) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase.</li> <li>Laccase ([ec:1.10.3.2]) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance [[cite:PUB00011817]].</li> <li>Ascorbate oxidase ([ec:1.10.3.3]), a 3-domain enzyme found in higher plants.</li> <li>Nitrite reductase ([ec:1.7.2.1]), a 2-domain enzyme containing type-1 and type-2 copper centres [[cite:PUB00035911], [cite:PUB00035912]].</li> </ul>
This description is obtained from EB-eye REST.
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Copper ion binding | Interacting selectively and non-covalently with copper (Cu) ions. |
Transcript | Name | Description | Predicted domains | Domain count |
---|---|---|---|---|
– | PREDICTED: laccase-14 [Vitis vinifera] gi|359495139|ref|XP_002264394.2| | 14 | ||
– | PREDICTED: laccase-14 [Vitis vinifera] gi|359495139|ref|XP_002264394.2| | 11 | ||
– | PREDICTED: laccase-5-like [Glycine max] gi|356540011|ref|XP_003538485.1| | 28 | ||
– | PREDICTED: laccase-8-like [Cicer arietinum] gi|502103902|ref|XP_004492390.1| | 28 | ||
– | PREDICTED: laccase-4-like [Glycine max] gi|356506772|ref|XP_003522150.1| | 26 | ||
– | PREDICTED: laccase-17-like [Cicer arietinum] gi|502103605|ref|XP_004492322.1| | 12 | ||
– | PREDICTED: laccase-17-like [Glycine max] gi|356527433|ref|XP_003532315.1| | 27 | ||
– | PREDICTED: laccase-17-like [Cicer arietinum] gi|502103605|ref|XP_004492322.1| | 26 | ||
– | Laccase [Medicago truncatula] gi|357492551|ref|XP_003616564.1| | 27 | ||
– | 20 | |||
– | PREDICTED: laccase-11-like [Glycine max] gi|356496745|ref|XP_003517226.1| | 28 | ||
– | PREDICTED: laccase-11-like [Glycine max] gi|356495402|ref|XP_003516567.1| | 28 | ||
– | Ascorbate oxidase [Lotus japonicus] gi|400001046|gb|AFP65861.1| | 16 | ||
– | PREDICTED: laccase-3-like [Glycine max] gi|356498985|ref|XP_003518325.1| | 26 | ||
– | PREDICTED: laccase-3-like [Cicer arietinum] gi|502096208|ref|XP_004490661.1| | 17 | ||
– | PREDICTED: laccase-5-like [Glycine max] gi|356551363|ref|XP_003544045.1| | 28 | ||
– | PREDICTED: laccase-6-like [Glycine max] gi|356522496|ref|XP_003529882.1| | 26 | ||
– | PREDICTED: laccase-4-like [Glycine max] gi|356498932|ref|XP_003518300.1| | 26 | ||
– | PREDICTED: L-ascorbate oxidase-like [Cicer arietinum] gi|502140076|ref|XP_004504046.1| | 24 | ||
– | PREDICTED: laccase-1-like [Fragaria vesca subsp]. vesca] gi|470130735|ref|XP_004301258.1| | 15 | ||
– | PREDICTED: LOW QUALITY PROTEIN: laccase-14-like [Vitis vinifera] gi|359495131|ref|XP_003634921.1| | 11 | ||
– | PREDICTED: laccase-14 [Vitis vinifera] gi|359495139|ref|XP_002264394.2| | 26 | ||
– | PREDICTED: laccase-14-like [Solanum lycopersicum] gi|460384303|ref|XP_004237852.1| | 14 | ||
– | PREDICTED: spore coat protein A-like isoform X1 [Cicer arietinum] gi|502120451|ref|XP_004496967.1| | 24 | ||
– | PREDICTED: laccase-4-like [Glycine max] gi|356566153|ref|XP_003551299.1| | 26 | ||
– | PREDICTED: L-ascorbate oxidase [Glycine max] gi|356575058|ref|XP_003555659.1| | 24 | ||
– | Laccase; TAIR: AT2G40370.1 laccase 5; Swiss-Prot: sp|Q9SIY8|LAC5_ARATH Laccase-5; TrEMBL-Plants: tr|A0A0S3RKD8|A0A0S3RKD8_PHAAN Laccase; Found in the gene: LotjaGi1g1v0073600 | 31 | ||
– | Laccase; TAIR: AT2G40370.1 laccase 5; Swiss-Prot: sp|Q9SIY8|LAC5_ARATH Laccase-5; TrEMBL-Plants: tr|V7B764|V7B764_PHAVU Laccase; Found in the gene: LotjaGi1g1v0073600 | 15 | ||
– | Laccase; TAIR: AT2G38080.1 Laccase/Diphenol oxidase family protein; Swiss-Prot: sp|O80434|LAC4_ARATH Laccase-4; TrEMBL-Plants: tr|A0A151S1M1|A0A151S1M1_CAJCA Laccase; Found in the gene: LotjaGi1g1v0081300 | 30 | ||
– | Laccase; TAIR: AT2G38080.1 Laccase/Diphenol oxidase family protein; Swiss-Prot: sp|O80434|LAC4_ARATH Laccase-4; TrEMBL-Plants: tr|A0A151S1M1|A0A151S1M1_CAJCA Laccase; Found in the gene: LotjaGi1g1v0081300 | 24 | ||
– | Laccase; TAIR: AT2G30210.1 laccase 3; Swiss-Prot: sp|Q56YT0|LAC3_ARATH Laccase-3; TrEMBL-Plants: tr|I1JHH8|I1JHH8_SOYBN Laccase; Found in the gene: LotjaGi1g1v0114400 | 29 | ||
– | Laccase; TAIR: AT2G30210.1 laccase 3; Swiss-Prot: sp|Q56YT0|LAC3_ARATH Laccase-3; TrEMBL-Plants: tr|G7JZP3|G7JZP3_MEDTR Laccase; Found in the gene: LotjaGi1g1v0114400 | 21 | ||
– | Laccase; TAIR: AT2G38080.1 Laccase/Diphenol oxidase family protein; Swiss-Prot: sp|O80434|LAC4_ARATH Laccase-4; TrEMBL-Plants: tr|I1JHB0|I1JHB0_SOYBN Laccase; Found in the gene: LotjaGi1g1v0123400 | 29 | ||
– | Laccase; TAIR: AT2G38080.1 Laccase/Diphenol oxidase family protein; Swiss-Prot: sp|O80434|LAC4_ARATH Laccase-4; TrEMBL-Plants: tr|G7KE42|G7KE42_MEDTR Laccase; Found in the gene: LotjaGi1g1v0123400 | 23 | ||
– | L-ascorbate oxidase; TAIR: AT5G21105.1 Plant L-ascorbate oxidase; Swiss-Prot: sp|P14133|ASO_CUCSA L-ascorbate oxidase; TrEMBL-Plants: tr|J7GBJ3|J7GBJ3_LOTJA Ascorbate oxidase; Found in the gene: LotjaGi1g1v0133700 | 17 | ||
– | Laccase; TAIR: AT5G01040.1 laccase 8; Swiss-Prot: sp|Q9LFD2|LAC8_ARATH Laccase-8; TrEMBL-Plants: tr|A0A072U0V9|A0A072U0V9_MEDTR Laccase; Found in the gene: LotjaGi1g1v0218900 | 29 | ||
– | Laccase; TAIR: AT5G60020.1 laccase 17; Swiss-Prot: sp|Q9FJD5|LAC17_ARATH Laccase-17; TrEMBL-Plants: tr|A0A072U047|A0A072U047_MEDTR Laccase; Found in the gene: LotjaGi1g1v0579400 | 29 | ||
– | Laccase; TAIR: AT5G60020.1 laccase 17; Swiss-Prot: sp|Q9FJD5|LAC17_ARATH Laccase-17; TrEMBL-Plants: tr|A0A151QZC4|A0A151QZC4_CAJCA Laccase-17; Found in the gene: LotjaGi1g1v0582000 | 19 | ||
– | Laccase; TAIR: AT5G60020.1 laccase 17; Swiss-Prot: sp|Q9FJD5|LAC17_ARATH Laccase-17; TrEMBL-Plants: tr|I1KZE6|I1KZE6_SOYBN Laccase; Found in the gene: LotjaGi1g1v0582000 | 30 | ||
– | Laccase; TAIR: AT5G60020.1 laccase 17; Swiss-Prot: sp|Q9FJD5|LAC17_ARATH Laccase-17; TrEMBL-Plants: tr|A0A072U047|A0A072U047_MEDTR Laccase; Found in the gene: LotjaGi1g1v0582200 | 29 | ||
– | Laccase; TAIR: AT5G03260.1 laccase 11; Swiss-Prot: sp|Q8VZA1|LAC11_ARATH Laccase-11; TrEMBL-Plants: tr|I1LHT8|I1LHT8_SOYBN Laccase; Found in the gene: LotjaGi2g1v0388900 | 31 | ||
– | Laccase; TAIR: AT5G03260.1 laccase 11; Swiss-Prot: sp|Q8VZA1|LAC11_ARATH Laccase-11; TrEMBL-Plants: tr|V7CFI0|V7CFI0_PHAVU Laccase; Found in the gene: LotjaGi2g1v0389000 | 31 | ||
– | Laccase; TAIR: AT2G38080.1 Laccase/Diphenol oxidase family protein; Swiss-Prot: sp|O80434|LAC4_ARATH Laccase-4; TrEMBL-Plants: tr|A0A1J7HEL7|A0A1J7HEL7_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0211300 | 29 | ||
– | Laccase; TAIR: AT2G38080.1 Laccase/Diphenol oxidase family protein; Swiss-Prot: sp|O80434|LAC4_ARATH Laccase-4; TrEMBL-Plants: tr|A0A0L9VT48|A0A0L9VT48_PHAAN Laccase; Found in the gene: LotjaGi3g1v0211300 | 13 | ||
– | Laccase; TAIR: AT2G46570.1 laccase 6; Swiss-Prot: sp|Q9ZPY2|LAC6_ARATH Laccase-6; TrEMBL-Plants: tr|A0A1J7GP42|A0A1J7GP42_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0398000 | 19 | ||
– | Laccase; TAIR: AT2G46570.1 laccase 6; Swiss-Prot: sp|Q9ZPY2|LAC6_ARATH Laccase-6; TrEMBL-Plants: tr|A0A072TM83|A0A072TM83_MEDTR Laccase; Found in the gene: LotjaGi3g1v0398000 | 29 | ||
– | Laccase; TAIR: AT2G29130.1 laccase 2; Swiss-Prot: sp|O81081|LAC2_ARATH Laccase-2; TrEMBL-Plants: tr|G7JUW8|G7JUW8_MEDTR Laccase; Found in the gene: LotjaGi3g1v0489900 | 30 | ||
– | Laccase; TAIR: AT2G29130.1 laccase 2; Swiss-Prot: sp|O81081|LAC2_ARATH Laccase-2; TrEMBL-Plants: tr|I1LQN6|I1LQN6_SOYBN Laccase; Found in the gene: LotjaGi3g1v0489900 | 23 | ||
– | L-ascorbate oxidase; TAIR: AT4G39830.1 Cupredoxin superfamily protein; Swiss-Prot: sp|P24792|ASO_CUCMA L-ascorbate oxidase; TrEMBL-Plants: tr|A0A0B2S1B6|A0A0B2S1B6_GLYSO L-ascorbate oxidase; Found in the gene: LotjaGi4g1v0400500 | 27 | ||
– | Laccase; TAIR: AT1G18140.1 laccase 1; Swiss-Prot: sp|Q9LMS3|LAC1_ARATH Laccase-1; TrEMBL-Plants: tr|M5WFA5|M5WFA5_PRUPE Laccase; Found in the gene: LotjaGi4g1v0462700 | 32 | ||
– | Laccase; TAIR: AT5G09360.1 laccase 14; Swiss-Prot: sp|Q9FY79|LAC14_ARATH Laccase-14; TrEMBL-Plants: tr|A0A1J7FTU7|A0A1J7FTU7_LUPAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0283600 | 29 | ||
– | Laccase; TAIR: AT5G09360.1 laccase 14; Swiss-Prot: sp|Q9FY79|LAC14_ARATH Laccase-14; TrEMBL-Plants: tr|A0A1J7FTU7|A0A1J7FTU7_LUPAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0283700 | 15 | ||
– | Laccase; TAIR: AT5G48100.1 Laccase/Diphenol oxidase family protein; Swiss-Prot: sp|Q84J37|LAC15_ARATH Laccase-15; TrEMBL-Plants: tr|G7J6C9|G7J6C9_MEDTR Laccase; Found in the gene: LotjaGi5g1v0283800 | 30 | ||
– | Laccase; TAIR: AT1G71040.1 Cupredoxin superfamily protein; Swiss-Prot: sp|Q949X9|LPR2_ARATH Multicopper oxidase LPR2; TrEMBL-Plants: tr|A0A151U7V8|A0A151U7V8_CAJCA Spore coat protein A; Found in the gene: LotjaGi5g1v0329700 | 23 | ||
– | Laccase; TAIR: AT2G40370.1 laccase 5; Swiss-Prot: sp|Q9SIY8|LAC5_ARATH Laccase-5; TrEMBL-Plants: tr|I1MYY9|I1MYY9_SOYBN Laccase; Found in the gene: LotjaGi6g1v0080700 | 30 | ||
– | Laccase; TAIR: AT2G40370.1 laccase 5; Swiss-Prot: sp|Q9FLB5|LAC12_ARATH Laccase-12; TrEMBL-Plants: tr|A0A0B2PB28|A0A0B2PB28_GLYSO Laccase; Found in the gene: LotjaGi6g1v0080700 | 21 | ||
– | Laccase; TAIR: AT2G40370.1 laccase 5; Swiss-Prot: sp|Q9FLB5|LAC12_ARATH Laccase-12; TrEMBL-Plants: tr|A0A0B2PB28|A0A0B2PB28_GLYSO Laccase; Found in the gene: LotjaGi6g1v0080700 | 21 | ||
– | Laccase; TAIR: AT2G40370.1 laccase 5; Swiss-Prot: sp|Q9FLB5|LAC12_ARATH Laccase-12; TrEMBL-Plants: tr|I1MYY9|I1MYY9_SOYBN Laccase; Found in the gene: LotjaGi6g1v0080700 | 29 | ||
– | Laccase; TAIR: AT2G38080.1 Laccase/Diphenol oxidase family protein; Swiss-Prot: sp|O80434|LAC4_ARATH Laccase-4; TrEMBL-Plants: tr|I1N014|I1N014_SOYBN Laccase; Found in the gene: LotjaGi6g1v0132300 | 29 | ||
– | Laccase; TAIR: AT2G38080.1 Laccase/Diphenol oxidase family protein; Swiss-Prot: sp|O80434|LAC4_ARATH Laccase-4; TrEMBL-Plants: tr|I1N014|I1N014_SOYBN Laccase; Found in the gene: LotjaGi6g1v0132300 | 23 | ||
– | Laccase; TAIR: AT2G38080.1 Laccase/Diphenol oxidase family protein; Swiss-Prot: sp|O80434|LAC4_ARATH Laccase-4; TrEMBL-Plants: tr|I1N014|I1N014_SOYBN Laccase; Found in the gene: LotjaGi6g1v0132300 | 23 | ||
– | Laccase; TAIR: AT2G38080.1 Laccase/Diphenol oxidase family protein; Swiss-Prot: sp|O80434|LAC4_ARATH Laccase-4; TrEMBL-Plants: tr|I1N014|I1N014_SOYBN Laccase; Found in the gene: LotjaGi6g1v0132300 | 23 | ||
– | L-ascorbate oxidase; TAIR: AT5G21105.1 Plant L-ascorbate oxidase; Swiss-Prot: sp|Q40588|ASO_TOBAC L-ascorbate oxidase; TrEMBL-Plants: tr|A0A0B2RL59|A0A0B2RL59_GLYSO L-ascorbate oxidase; Found in the gene: LotjaGi6g1v0191100 | 27 |
A list of co-occurring predicted domains within the L. japonicus gene space:
Predicted domain | Source | Observations | Saturation (%) |
---|---|---|---|
cd13893 | CDD | 1 | 1.59 |