Domain Predictions — View

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cd16479

Source: CDD

Description

RING-H2_synoviolin

Associated GO terms

Unable to find any GO terms for the transcript with the identifier.

Associated Lotus transcripts 5

Transcript	Name	Description	Predicted domains	Domain count
LotjaGi2g1v0449600.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	RING/U-box superfamily protein; TAIR: AT3G16090.1 RING/U-box superfamily protein; Swiss-Prot: sp\|Q9LW77\|HRD1A_ARATH ERAD-associated E3 ubiquitin-protein ligase HRD1A; TrEMBL-Plants: tr\|G7K6H0\|G7K6H0_MEDTR Ubiquitin-protein ligase synoviolin; Found in the gene: LotjaGi2g1v0449600	Domains CYTOPLASMIC_DOMAIN G3DSA:3.30.40.10 IPR001841 IPR013083 NON_CYTOPLASMIC_DOMAIN PF13639 PS50089 PTHR22765 PTHR22765:SF218 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION SM00184 SSF57850 TMhelix TRANSMEMBRANE cd16479 mobidb-lite	19
LotjaGi6g1v0175300.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	RING/U-box superfamily protein; TAIR: AT3G16090.1 RING/U-box superfamily protein; Swiss-Prot: sp\|Q9LW77\|HRD1A_ARATH ERAD-associated E3 ubiquitin-protein ligase HRD1A; TrEMBL-Plants: tr\|G7K6H0\|G7K6H0_MEDTR Ubiquitin-protein ligase synoviolin; Found in the gene: LotjaGi6g1v0175300	Domains CYTOPLASMIC_DOMAIN G3DSA:3.30.40.10 IPR001841 IPR013083 NON_CYTOPLASMIC_DOMAIN PF13639 PS50089 PTHR22765 PTHR22765:SF218 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION SM00184 SSF57850 TMhelix TRANSMEMBRANE cd16479 mobidb-lite	19
LotjaGi6g1v0175300.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	RING/U-box superfamily protein; TAIR: AT3G16090.1 RING/U-box superfamily protein; Swiss-Prot: sp\|Q9LW77\|HRD1A_ARATH ERAD-associated E3 ubiquitin-protein ligase HRD1A; TrEMBL-Plants: tr\|G7K6H0\|G7K6H0_MEDTR Ubiquitin-protein ligase synoviolin; Found in the gene: LotjaGi6g1v0175300	Domains CYTOPLASMIC_DOMAIN G3DSA:3.30.40.10 IPR001841 IPR013083 NON_CYTOPLASMIC_DOMAIN PF13639 PS50089 PTHR22765 PTHR22765:SF218 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION SM00184 SSF57850 TMhelix TRANSMEMBRANE cd16479 mobidb-lite	19
LotjaGi6g1v0175300.3 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	RING/U-box superfamily protein; TAIR: AT3G16090.1 RING/U-box superfamily protein; Swiss-Prot: sp\|Q9LW77\|HRD1A_ARATH ERAD-associated E3 ubiquitin-protein ligase HRD1A; TrEMBL-Plants: tr\|G7K6H0\|G7K6H0_MEDTR Ubiquitin-protein ligase synoviolin; Found in the gene: LotjaGi6g1v0175300	Domains CYTOPLASMIC_DOMAIN G3DSA:3.30.40.10 IPR001841 IPR013083 NON_CYTOPLASMIC_DOMAIN PF13639 PS50089 PTHR22765 PTHR22765:SF218 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION SM00184 SSF57850 TMhelix TRANSMEMBRANE cd16479 mobidb-lite	19
LotjaGi6g1v0175300.4 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	RING/U-box superfamily protein; TAIR: AT3G16090.1 RING/U-box superfamily protein; Swiss-Prot: sp\|Q9LW77\|HRD1A_ARATH ERAD-associated E3 ubiquitin-protein ligase HRD1A; TrEMBL-Plants: tr\|G7K6H0\|G7K6H0_MEDTR Ubiquitin-protein ligase synoviolin; Found in the gene: LotjaGi6g1v0175300	Domains CYTOPLASMIC_DOMAIN G3DSA:3.30.40.10 IPR001841 IPR013083 NON_CYTOPLASMIC_DOMAIN PF13639 PS50089 PTHR22765 PTHR22765:SF218 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION SM00184 SSF57850 TMhelix TRANSMEMBRANE cd16479 mobidb-lite	19

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain	Source	Observations	Saturation (%)
mobidb-lite	MobiDBLite	1	20.00