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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0175300 |
| Transcript ID | LotjaGi6g1v0175300.4 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RING/U-box superfamily protein; TAIR: AT3G16090.1 RING/U-box superfamily protein; Swiss-Prot: sp|Q9LW77|HRD1A_ARATH ERAD-associated E3 ubiquitin-protein ligase HRD1A; TrEMBL-Plants: tr|G7K6H0|G7K6H0_MEDTR Ubiquitin-protein ligase synoviolin; Found in the gene: LotjaGi6g1v0175300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:46555558..46560608) extracted from Lotus japonicus Gifu genome v1.2.
ATGAGGCTGAAAACATATGCTGGTCTGAGCTTGATAGCAACTTTGGCTATCACATATCATGCATTTAACAGTAGGGGTCA GTTTTATCCGGCGATGGTGTATCTCTCGACTTCCAAGATCAGTTTGGTGCTTCTTCTCAACATGGGTTTGGTTATCATGT GCACTCTTTGGCAATTGACCAAAAAGCTGTTCCTGGGTTCCCTTCGGGAGGCGGAGGTTGAGAGGCTTAATGAGCAGTCG TGGAGGGAGGTTATGGAAATCCTCTTTGCCATTACTATTTTCCGGCAGGACTTCTCGGTTACGTTCCTTGCCATGGTCAC CGCGCTGTTATTGATTAAGGCTTTGCATTGGTTGGCACAGAAGAGAGTCGAGTACATCGAGACCACTCCTTCGGTGACTT GGCTATCCCATGTTCGAATCGTATCTTTTATGGGTTTCCTCCTCCTTCTGGATAGCATTTTCTTATATAGTTCTATGAAA CATTTGATAGAAACGTGGCAGGCTTCGGTTTCACTATTCTTTTCTTTCGAGTAAGTTTTCATATTCCTTTTTCTCCTCCA AAATAGTATGGCAGCTGAATTTCAGCCTTTACTTTTTATTTAAATTTGTTTCCATTTTGATTCAGTTATACATAAACCCA ACTAGGTCATGTTGTTGTGTGAAATTTCACATTGTGATTAACTACTTTAATTTTCCTGTTCTTAATCAAGCTATTCATTG CTGGGAATATCATGACGTAGTTAAGAATGAAATATGAGAAAGGAAATTTTATCCTACAATGATACCATCGCAGTTGTTTG GCATAGAGGGAATAAAAGAATTATCTGAATATTCATTAAACTTTATGACAGTAATTGTGAATTATACGTTCATAAAATTC TTCATTACTGAGACACTGGTAGTATTATTTTCTTTATGAATATTTATCGCATCAAATAAAGTGGATTTTACTTGTGATGC TCAACTTAACATACTACTATTGCTATTGTCTGCAACTCTCCATATACAATAAATCTTTCCAAGTCTTCCATTACGTGGCA ACTCCTTATTCATTTCTTTCGTGTCTTTTGATGAACGATTTTTTCAAATTTTTCCTTTTCTAATTATCGTACATTTCACT TTTCAGTTTTTCCAAATGAAAAACATTTTTGACTATTTTTTTACTTCCCTGAGCATTTTTGCACGGGACTGCATTCTAGT TCATATAATAACTTGCGTCATTACTTTACTTAATTATTTTACTAAATAATTAAATTCCATAATGCCTACATGAGCTATAG ATCAGGCACAACACTTCTACACGCTTTCGTCTTTTATTTGTGGTTTCCACATAGTGTGATCTATGTAGCCGATCCTACTT AGTGAGAAAAGGCTTGGTTGTTATTATAATTTGTAGTTTCAGATGTTCTTGCTATTTTCTGCATTATATATATATATATA TATATATATATATATACACATATATATATTTGAAATGGTAAATACTTGATTTTTTTTTTGACAAATCTGTTTTTGTCTCA GGTACATGATATTGGCAACAACAACAGTTTCGATTTTTGTAAAATATATTTTCTATGTCAGTGACATGCTTATGGAGGGA CAGTGGGAAAAGAAACCAGTCTTCACATTTTACCTGGAACTTATCAGAGACTTGCTTCACTTGTCTATGTATCTGTGCTT CTTTTTCTTGATATTTGTGTAAGTGATCAGTCAATTCTTCTTTTTTATATGTATGGTAGCCTTCACATATGCATGCACAA TGGAAGTCATAGTCTCTGTTTTTTTGCGTGTGTCATCAACAGTTACTCAATTAGCCGTTGGGGAATCTGATATATCTTCA TAATTGGCTATCATATTGACACTTATATTTTCTGTTACATAACATGTCTACATTTGGTTTGTTTGTTTCGCATACTCATT TTATTTTTGGTTTGATTACATGTTTAACATTCACTGGTTATTTAGCCTACTAACTTTAAGTTGATCTATTAGGAACTATG GTATTCCCCTGCACCTAATACGGGAGCTGTACGAGACATTTAGGAATTTCAAAGTTCGTATTGCAGATTACATTAGATAT CGTAAGATCACTTCAAATATGAATGATCGCTTTCCAGATGCCACACCTGAAGAGCTTAATGCGTTAGTTCTAAACTTGGA AAATAACATCTCGTCTTATTAATTTAATATTTATGATATTGAATATATATTTTTTAAATGGCCTTGCAGAAGTGACGCAA CCTGCATAATCTGTCGTGAAGAGATGACTACAGCCAAGAAACTTATATGTGGACATCTTTTTCATGTTCATTGCCTCCGA TCATGGCTGGAGCGGCAGCATACTTGCCCTACCTGCCGAGCCTTGGTTGTGCCACCAGAAAATGGAACAACTGTTGCTGG AGGGCAGCAAGGATCACAGTCAGATGGTCACCGGCAGGGTAATCATATCACAACTCACTCTAGGACTAGGTAGATAGTTT TTATAAAATATATCAGTAATGTGCAAGATGTCATAAGCTTATTTCCAGGGACACAATTTCTTAAAATTAAAGCAAAAAGA AACCAGAGTTGGAAGTCTGATCCTGAATTTAGTTACAACTCTTGCAATCTGCACCTTCCACCAAATACTTATCTCTTTTG TATGCATTTGTGAAATTTTCTCATTCGTTTCATATGATGCTCCCAAACATGCTATTATAGAACTTCTTGCATATATTGGT TAACTTCCAAAACCTTGTTTCGGTGATTATGTTGCCTCTTTGAGTCCAACACAACTATACTGTTTAAGATATTTTGAATA TAATATCTTGAAAATTATATAAGCATATAGCTTGATGCTCTTGTCATTTTAAACATCCAGGCTTTGTATATATGTTTATT CACTGTATCGTTTAATATTGATTATTTTAACCTGGAGCAGGAACTGGGACAGCTGGAAGCACAGCTCAAAATGAAGCTGG CAGCGGGATGGCAACTGATAGTTTGAGTCGGCATGAAGCTAGGCTCCAAGCTGCTGCTGCTGCAGCTTCAATATATGAGA AGTCTTATGTTTATCCCTCTGCATCATCTTCTGTATGGTATGCTTGGACAATATCTCTCATTTTCTTCATCTGTTTATGA AATCAGTTTTATGCTGTGGATATTACTGGTTATCGATATAATAACTCATCTTCTAAGACCATTGCATATACACTGATAGA TAGAATTCAACATGGGATAAATTTTATTATTTTTGAAACTCCTAAAATACGAATAATGTTGAGTGGACTTCATCATGGCA TTTTCTAAGATATGGCGCATGCTTGGGGTGGGTAGGTGCCTTCCCTTGGTGGGGTGGGACTAATAAGATAATTAAAGAGA GCAAGTGAAATAGAAAAGTAAATGAGTTACACTTAGAAGAATTGGCAGGTTCGAGAGTTGAATATATTGAGAATAACCTA TAGAGTTGATTAAAATGACAGCTCTGGGGAATTGGTTTTTGACATAACACATGGTGTTCTCTGATTCATGTAGCTGATGA GAACATTGTCTGGTTGTTTTAGTCTATTCTTTCAGTTTGAGACATAATTCTAATTTGTCAAAGCTGGGTTTTGAGAACAT ATGAATTCTGAATTTCTGATTCTTTTGAAACTGTACAAGTTATTCCTAAATTTTAACAGTCTTATGTTTTGTTCTTTCCT GCGTATTTCAAGCAGGAAAGAACAAGTTGAACCTTTTTAATTTCAAGACTTTATCTGCATTTTATGAGCTCCTGAATTGA AAGTTTGTTTTTGAAATCTTAGGGCCTGTTTGTTTCTATTATTGTTTTCTTGTCAATTAAACTTTTTTTTTCATAGAATT ACTTCACAGAATAAAAATATTTAAAAAACATTTTTCATTGTACTTTCTTTTCCATTTTTCAATGAAGTTTTGAAATCATG GGGATACTTTGGTGATAATGATGAGGGTGTTGTGGTAATGGTGGGAGCAGAGGTGTGATGTTGGGGCTGGTGGCAGCGTT GGTTTGAAATGAAAGTCCAAACGACTAAATTATGGAGAACAAATGTTCTTCTCTAAAAGTATACTATGGAGGACGAGTTT ATCAACTAATCAGATAAAAAATAGAAGGTGGTTCTTTTTATGTGGTTTAGACTTTAGTTTTTTAAAATAAAACTATCTTC AAGTTTGGCAATCAAACTTGCCTTGATTGCTGGATTTCTGATTGAATTCAATTCAATAAAGTTTACAGATTTTGGAAAAT ATAGAATCTGAAAATTATGAATTGCTGCTTTGGCATAAAAGTTTGGTGGTGAACAGTTATTGACTAAATCTGGTTGAATA TATTGCATCAGAGTATCACGAACTATGCTACATTACATTTTCACTTGTTATTCTTCCACTTAATGCACCTGTTTGCTGAG ATGATTGATTAACAAGGAAAAGGTCTTACTCTTCTTATATTTAAACGTCGCTTGAAAAATTGATAATACTATATGAAGTG CTTAAATAACTAAGTGTGTGCTGAAATTCACAGCTCTCCGGGGCACGCATTTTATACCCCTTCTAGTACTGGATTTAATG GAGAACAAGCTTCCAGTGAACAAGCACAAAAGCAGTTTCTTATCCCTGGTCAACCAACAAATGTATCCTTTCCTCCAATG GGACACTACAATTTTCTGCCTTCCCAAACGTTTGCAGCCCCTGTGAATTATGGAGAAGCGTTTGGAAATGATCCAAACAT CCCAAGCTCTCAGCTGGAAGCTCATAGAAAATTTCTCCGATGGCAGATTGAGGTACAATTGTGCTTTCTTTTTTCTTTAC CTCCATGTAGTAAGTGTTGTGTGACACATCTTGGTTTTACCTGAATATTAAAAGTCACATTTCATGATTATGGTGACCAT CAAATGAATATTCCTTATACTATTCTTTTCTTTTGATGGGTGTCAAATCCTACTTGTTGCTTTTAATTAGTGCAGAAGAT GATATTTGGGATGAAGATATTGATCTTTTCGATAATGTTGGCTTTGCTATAGATTTAGATCTTATTGACGTGTATGTTCA CTGATGTAATT
CDS sequence (LotjaGi6g1v0175300.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGGCTGAAAACATATGCTGGTCTGAGCTTGATAGCAACTTTGGCTATCACATATCATGCATTTAACAGTAGGGGTCA GTTTTATCCGGCGATGGTGTATCTCTCGACTTCCAAGATCAGTTTGGTGCTTCTTCTCAACATGGGTTTGGTTATCATGT GCACTCTTTGGCAATTGACCAAAAAGCTGTTCCTGGGTTCCCTTCGGGAGGCGGAGGTTGAGAGGCTTAATGAGCAGTCG TGGAGGGAGGTTATGGAAATCCTCTTTGCCATTACTATTTTCCGGCAGGACTTCTCGGTTACGTTCCTTGCCATGGTCAC CGCGCTGTTATTGATTAAGGCTTTGCATTGGTTGGCACAGAAGAGAGTCGAGTACATCGAGACCACTCCTTCGGTGACTT GGCTATCCCATGTTCGAATCGTATCTTTTATGGGTTTCCTCCTCCTTCTGGATAGCATTTTCTTATATAGTTCTATGAAA CATTTGATAGAAACGTGGCAGGCTTCGGTTTCACTATTCTTTTCTTTCGAGTACATGATATTGGCAACAACAACAGTTTC GATTTTTGTAAAATATATTTTCTATGTCAGTGACATGCTTATGGAGGGACAGTGGGAAAAGAAACCAGTCTTCACATTTT ACCTGGAACTTATCAGAGACTTGCTTCACTTGTCTATGTATCTGTGCTTCTTTTTCTTGATATTTGTGAACTATGGTATT CCCCTGCACCTAATACGGGAGCTGTACGAGACATTTAGGAATTTCAAAGTTCGTATTGCAGATTACATTAGATATCGTAA GATCACTTCAAATATGAATGATCGCTTTCCAGATGCCACACCTGAAGAGCTTAATGCAAGTGACGCAACCTGCATAATCT GTCGTGAAGAGATGACTACAGCCAAGAAACTTATATGTGGACATCTTTTTCATGTTCATTGCCTCCGATCATGGCTGGAG CGGCAGCATACTTGCCCTACCTGCCGAGCCTTGGTTGTGCCACCAGAAAATGGAACAACTGTTGCTGGAGGGCAGCAAGG ATCACAGTCAGATGGTCACCGGCAGGCAGGAACTGGGACAGCTGGAAGCACAGCTCAAAATGAAGCTGGCAGCGGGATGG CAACTGATAGTTTGAGTCGGCATGAAGCTAGGCTCCAAGCTGCTGCTGCTGCAGCTTCAATATATGAGAAGTCTTATGTT TATCCCTCTGCATCATCTTCTGTATGTAAGTGTGTGCTGAAATTCACAGCTCTCCGGGGCACGCATTTTATACCCCTTCT AGTACTGGATTTAATGGAGAACAAGCTTCCAGTGAACAAGCACAAAAGCAGTTTCTTATCCCTGGTCAACCAACAAATGT ATCCTTTCCTCCAATGGGACACTACAATTTTCTGCCTTCCCAAACGTTTGCAGCCCCTGTGA
Protein sequence (LotjaGi6g1v0175300.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRLKTYAGLSLIATLAITYHAFNSRGQFYPAMVYLSTSKISLVLLLNMGLVIMCTLWQLTKKLFLGSLREAEVERLNEQS WREVMEILFAITIFRQDFSVTFLAMVTALLLIKALHWLAQKRVEYIETTPSVTWLSHVRIVSFMGFLLLLDSIFLYSSMK HLIETWQASVSLFFSFEYMILATTTVSIFVKYIFYVSDMLMEGQWEKKPVFTFYLELIRDLLHLSMYLCFFFLIFVNYGI PLHLIRELYETFRNFKVRIADYIRYRKITSNMNDRFPDATPEELNASDATCIICREEMTTAKKLICGHLFHVHCLRSWLE RQHTCPTCRALVVPPENGTTVAGGQQGSQSDGHRQAGTGTAGSTAQNEAGSGMATDSLSRHEARLQAAAAAASIYEKSYV YPSASSSVCKCVLKFTALRGTHFIPLLVLDLMENKLPVNKHKSSFLSLVNQQMYPFLQWDTTIFCLPKRLQPL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 6 | 6 | - | – | |
| Phobius | 1 | 26 | 26 | - | – | |
| TMHMM | 5 | 22 | 18 | - | – | |
| Phobius | 7 | 18 | 12 | - | – | |
| Phobius | 19 | 26 | 8 | - | – | |
| Phobius | 27 | 41 | 15 | - | – | |
| TMHMM | 32 | 54 | 23 | - | – | |
| Phobius | 42 | 59 | 18 | - | – | |
| PANTHER | 53 | 410 | 358 | 1.4E-231 | – | |
| PANTHER | 53 | 410 | 358 | 1.4E-231 | – | |
| Phobius | 60 | 97 | 38 | - | – | |
| Phobius | 98 | 118 | 21 | - | – | |
| TMHMM | 98 | 120 | 23 | - | – | |
| Phobius | 119 | 137 | 19 | - | – | |
| TMHMM | 135 | 157 | 23 | - | – | |
| Phobius | 138 | 158 | 21 | - | – | |
| Phobius | 159 | 169 | 11 | - | – | |
| Phobius | 170 | 194 | 25 | - | – | |
| TMHMM | 170 | 192 | 23 | - | – | |
| Phobius | 195 | 223 | 29 | - | – | |
| TMHMM | 223 | 245 | 23 | - | – | |
| Phobius | 224 | 245 | 22 | - | – | |
| Phobius | 246 | 473 | 228 | - | – | |
| Gene3D | 263 | 336 | 74 | 8.1E-22 | ||
| SUPERFAMILY | 271 | 335 | 65 | 2.65E-21 | – | |
| CDD | 288 | 329 | 42 | 2.0919E-26 | – | |
| Pfam | 290 | 329 | 40 | 1.1E-10 | ||
| ProSiteProfiles | 291 | 329 | 39 | 12.622 | ||
| SMART | 291 | 328 | 38 | 7.6E-4 | ||
| MobiDBLite | 339 | 374 | 36 | - | – | |
| MobiDBLite | 339 | 377 | 39 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0175300.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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