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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0175300 |
| Transcript ID | LotjaGi6g1v0175300.1 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RING/U-box superfamily protein; TAIR: AT3G16090.1 RING/U-box superfamily protein; Swiss-Prot: sp|Q9LW77|HRD1A_ARATH ERAD-associated E3 ubiquitin-protein ligase HRD1A; TrEMBL-Plants: tr|G7K6H0|G7K6H0_MEDTR Ubiquitin-protein ligase synoviolin; Found in the gene: LotjaGi6g1v0175300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:46554924..46561827) extracted from Lotus japonicus Gifu genome v1.2.
CTAGATCGCTAGAATTAGAATTATTGGGAAACAATACGGAATAATATTTACTACTAAAACATTTAATTGGCATGTCCATT CATCAGCACACGTGGCGAAATCTCATTGGACACACTTACATCATTTTCACAAACGAAGTTTATTGTTTGTATAAGAGAAA CAAATCGGAACTCCACCGCGAGAACCAGAGCAGGGTGGTCGCCACCGACGCAGTTTCTTCTTCCGTTTCAACTCCGAACC TTCACCTTCACCGTCCATTTCAATTGGTACCTAATTTCCTCAATCAAACCTTTTCTTTTGATTTTTTTTTTTCAAATTTC TTTGACTTCATATTGATCTGAATCCAAGTCCATGGCTTATCTTGTTTCGGTGATTTATCTGCATAATCTGAATATGCAGA TTCATTCAATTGGTTTAAATTTCTCGCTAATTTCTGAAGTTGAATGAATTACTAGGTCAATCATTTCTAATATTTCTTCT AGGAACCAATTATTTAGGGTCTTGTATGTATGTTTATTTCGTTTGTTTGATTCTTCTTCATGGAGCATCCAAATGCATAT TGTAGGATTGAATCACTATATAGGGTTTCAGATGTTGATTGAATGATTTTTGTTTCTTTGTGTAGAGCTGAATGATGAGG CTGAAAACATATGCTGGTCTGAGCTTGATAGCAACTTTGGCTATCACATATCATGCATTTAACAGTAGGGGTCAGTTTTA TCCGGCGATGGTGTATCTCTCGACTTCCAAGATCAGTTTGGTGCTTCTTCTCAACATGGGTTTGGTTATCATGTGCACTC TTTGGCAATTGACCAAAAAGCTGTTCCTGGGTTCCCTTCGGGAGGCGGAGGTTGAGAGGCTTAATGAGCAGTCGTGGAGG GAGGTTATGGAAATCCTCTTTGCCATTACTATTTTCCGGCAGGACTTCTCGGTTACGTTCCTTGCCATGGTCACCGCGCT GTTATTGATTAAGGCTTTGCATTGGTTGGCACAGAAGAGAGTCGAGTACATCGAGACCACTCCTTCGGTGACTTGGCTAT CCCATGTTCGAATCGTATCTTTTATGGGTTTCCTCCTCCTTCTGGATAGCATTTTCTTATATAGTTCTATGAAACATTTG ATAGAAACGTGGCAGGCTTCGGTTTCACTATTCTTTTCTTTCGAGTAAGTTTTCATATTCCTTTTTCTCCTCCAAAATAG TATGGCAGCTGAATTTCAGCCTTTACTTTTTATTTAAATTTGTTTCCATTTTGATTCAGTTATACATAAACCCAACTAGG TCATGTTGTTGTGTGAAATTTCACATTGTGATTAACTACTTTAATTTTCCTGTTCTTAATCAAGCTATTCATTGCTGGGA ATATCATGACGTAGTTAAGAATGAAATATGAGAAAGGAAATTTTATCCTACAATGATACCATCGCAGTTGTTTGGCATAG AGGGAATAAAAGAATTATCTGAATATTCATTAAACTTTATGACAGTAATTGTGAATTATACGTTCATAAAATTCTTCATT ACTGAGACACTGGTAGTATTATTTTCTTTATGAATATTTATCGCATCAAATAAAGTGGATTTTACTTGTGATGCTCAACT TAACATACTACTATTGCTATTGTCTGCAACTCTCCATATACAATAAATCTTTCCAAGTCTTCCATTACGTGGCAACTCCT TATTCATTTCTTTCGTGTCTTTTGATGAACGATTTTTTCAAATTTTTCCTTTTCTAATTATCGTACATTTCACTTTTCAG TTTTTCCAAATGAAAAACATTTTTGACTATTTTTTTACTTCCCTGAGCATTTTTGCACGGGACTGCATTCTAGTTCATAT AATAACTTGCGTCATTACTTTACTTAATTATTTTACTAAATAATTAAATTCCATAATGCCTACATGAGCTATAGATCAGG CACAACACTTCTACACGCTTTCGTCTTTTATTTGTGGTTTCCACATAGTGTGATCTATGTAGCCGATCCTACTTAGTGAG AAAAGGCTTGGTTGTTATTATAATTTGTAGTTTCAGATGTTCTTGCTATTTTCTGCATTATATATATATATATATATATA TATATATATACACATATATATATTTGAAATGGTAAATACTTGATTTTTTTTTTGACAAATCTGTTTTTGTCTCAGGTACA TGATATTGGCAACAACAACAGTTTCGATTTTTGTAAAATATATTTTCTATGTCAGTGACATGCTTATGGAGGGACAGTGG GAAAAGAAACCAGTCTTCACATTTTACCTGGAACTTATCAGAGACTTGCTTCACTTGTCTATGTATCTGTGCTTCTTTTT CTTGATATTTGTGTAAGTGATCAGTCAATTCTTCTTTTTTATATGTATGGTAGCCTTCACATATGCATGCACAATGGAAG TCATAGTCTCTGTTTTTTTGCGTGTGTCATCAACAGTTACTCAATTAGCCGTTGGGGAATCTGATATATCTTCATAATTG GCTATCATATTGACACTTATATTTTCTGTTACATAACATGTCTACATTTGGTTTGTTTGTTTCGCATACTCATTTTATTT TTGGTTTGATTACATGTTTAACATTCACTGGTTATTTAGCCTACTAACTTTAAGTTGATCTATTAGGAACTATGGTATTC CCCTGCACCTAATACGGGAGCTGTACGAGACATTTAGGAATTTCAAAGTTCGTATTGCAGATTACATTAGATATCGTAAG ATCACTTCAAATATGAATGATCGCTTTCCAGATGCCACACCTGAAGAGCTTAATGCGTTAGTTCTAAACTTGGAAAATAA CATCTCGTCTTATTAATTTAATATTTATGATATTGAATATATATTTTTTAAATGGCCTTGCAGAAGTGACGCAACCTGCA TAATCTGTCGTGAAGAGATGACTACAGCCAAGAAACTTATATGTGGACATCTTTTTCATGTTCATTGCCTCCGATCATGG CTGGAGCGGCAGCATACTTGCCCTACCTGCCGAGCCTTGGTTGTGCCACCAGAAAATGGAACAACTGTTGCTGGAGGGCA GCAAGGATCACAGTCAGATGGTCACCGGCAGGGTAATCATATCACAACTCACTCTAGGACTAGGTAGATAGTTTTTATAA AATATATCAGTAATGTGCAAGATGTCATAAGCTTATTTCCAGGGACACAATTTCTTAAAATTAAAGCAAAAAGAAACCAG AGTTGGAAGTCTGATCCTGAATTTAGTTACAACTCTTGCAATCTGCACCTTCCACCAAATACTTATCTCTTTTGTATGCA TTTGTGAAATTTTCTCATTCGTTTCATATGATGCTCCCAAACATGCTATTATAGAACTTCTTGCATATATTGGTTAACTT CCAAAACCTTGTTTCGGTGATTATGTTGCCTCTTTGAGTCCAACACAACTATACTGTTTAAGATATTTTGAATATAATAT CTTGAAAATTATATAAGCATATAGCTTGATGCTCTTGTCATTTTAAACATCCAGGCTTTGTATATATGTTTATTCACTGT ATCGTTTAATATTGATTATTTTAACCTGGAGCAGGAACTGGGACAGCTGGAAGCACAGCTCAAAATGAAGCTGGCAGCGG GATGGCAACTGATAGTTTGAGTCGGCATGAAGCTAGGCTCCAAGCTGCTGCTGCTGCAGCTTCAATATATGAGAAGTCTT ATGTTTATCCCTCTGCATCATCTTCTGTATGGTATGCTTGGACAATATCTCTCATTTTCTTCATCTGTTTATGAAATCAG TTTTATGCTGTGGATATTACTGGTTATCGATATAATAACTCATCTTCTAAGACCATTGCATATACACTGATAGATAGAAT TCAACATGGGATAAATTTTATTATTTTTGAAACTCCTAAAATACGAATAATGTTGAGTGGACTTCATCATGGCATTTTCT AAGATATGGCGCATGCTTGGGGTGGGTAGGTGCCTTCCCTTGGTGGGGTGGGACTAATAAGATAATTAAAGAGAGCAAGT GAAATAGAAAAGTAAATGAGTTACACTTAGAAGAATTGGCAGGTTCGAGAGTTGAATATATTGAGAATAACCTATAGAGT TGATTAAAATGACAGCTCTGGGGAATTGGTTTTTGACATAACACATGGTGTTCTCTGATTCATGTAGCTGATGAGAACAT TGTCTGGTTGTTTTAGTCTATTCTTTCAGTTTGAGACATAATTCTAATTTGTCAAAGCTGGGTTTTGAGAACATATGAAT TCTGAATTTCTGATTCTTTTGAAACTGTACAAGTTATTCCTAAATTTTAACAGTCTTATGTTTTGTTCTTTCCTGCGTAT TTCAAGCAGGAAAGAACAAGTTGAACCTTTTTAATTTCAAGACTTTATCTGCATTTTATGAGCTCCTGAATTGAAAGTTT GTTTTTGAAATCTTAGGGCCTGTTTGTTTCTATTATTGTTTTCTTGTCAATTAAACTTTTTTTTTCATAGAATTACTTCA CAGAATAAAAATATTTAAAAAACATTTTTCATTGTACTTTCTTTTCCATTTTTCAATGAAGTTTTGAAATCATGGGGATA CTTTGGTGATAATGATGAGGGTGTTGTGGTAATGGTGGGAGCAGAGGTGTGATGTTGGGGCTGGTGGCAGCGTTGGTTTG AAATGAAAGTCCAAACGACTAAATTATGGAGAACAAATGTTCTTCTCTAAAAGTATACTATGGAGGACGAGTTTATCAAC TAATCAGATAAAAAATAGAAGGTGGTTCTTTTTATGTGGTTTAGACTTTAGTTTTTTAAAATAAAACTATCTTCAAGTTT GGCAATCAAACTTGCCTTGATTGCTGGATTTCTGATTGAATTCAATTCAATAAAGTTTACAGATTTTGGAAAATATAGAA TCTGAAAATTATGAATTGCTGCTTTGGCATAAAAGTTTGGTGGTGAACAGTTATTGACTAAATCTGGTTGAATATATTGC ATCAGAGTATCACGAACTATGCTACATTACATTTTCACTTGTTATTCTTCCACTTAATGCACCTGTTTGCTGAGATGATT GATTAACAAGGAAAAGGTCTTACTCTTCTTATATTTAAACGTCGCTTGAAAAATTGATAATACTATATGAAGTGCTTAAA TAACTAAGTGTGTGCTGAAATTCACAGCTCTCCGGGGCACGCATTTTATACCCCTTCTAGTACTGGATTTAATGGAGAAC AAGCTTCCAGTGAACAAGCACAAAAGCAGTTTCTTATCCCTGGTCAACCAACAAATGTATCCTTTCCTCCAATGGGACAC TACAATTTTCTGCCTTCCCAAACGTTTGCAGCCCCTGTGAATTATGGAGAAGCGTTTGGAAATGATCCAAACATCCCAAG CTCTCAGCTGGAAGCTCATAGAAAATTTCTCCGATGGCAGATTGAGGTACAATTGTGCTTTCTTTTTTCTTTACCTCCAT GTAGTAAGTGTTGTGTGACACATCTTGGTTTTACCTGAATATTAAAAGTCACATTTCATGATTATGGTGACCATCAAATG AATATTCCTTATACTATTCTTTTCTTTTGATGGGTGTCAAATCCTACTTGTTGCTTTTAATTAGTGCAGAAGATGATATT TGGGATGAAGATATTGATCTTTTCGATAATGTTGGCTTTGCTATAGATTTAGATCTTATTGACGTGTATGTTCACTGATG TAATTATTTTGGGTACATGTACTCAATTTTAATAATATTGTTGTGTTGGCTTTTAAAAAATATGAAGGTTCCTTCTCACT GTCTGTCCTCTCAGTTCTGTCATCCCAATGAGGGACATCTACTGGTATTATCTTAACTATCAATTAGGGTTCTATAAGAA TTTAGTTATAAGTTCATGCCAAATGAATGCATGCAAATTGGTTCTTATTTTTTCGAGCTTGTCATATTTGATTCTAGCAT TCTAAAATATTATGCACGAATCTGCGTCTGCACCAATGTGCACAGTGCATGCATGATCTCTTTAATTGTACAGTTGAATG TTTGGTAGAGATTGAATTACATTATTTTAAGCTACACCATCCACTAATTACTCAATTTTGAACAGGTTTTGGAAAAGCAG TTACGGAATCTTCCAGAGACAAAAGCTGATGACAGAAGTGTAGATGACGGCACATCATCATCAGATAGCAGAGGCAAGCT TATTACTTCATCGTCATCTGTTTCTGGTCATGTTCACCATGATGAGGAGATTCAAGATGGGAAAGCCTAAAATCGGCTGG CAAATATCCAGGACACAGCTAAATGTAGATATAGGATTAGGAAGAGGAGAATACCGAAATGACACTATTGCTTTAACATT GTAAATGCACACTGTCAGTGCCCCTTAATATGATTCAGGCCTCCTTTTTCTAATGAAACAAATGCGTTTAGATTAGCTTT GAAACCTCGGCAAAGGGTTGATCGAGGGAAGCATGACACAGACAGGTCTAGTATCTGACATGTATGTTTGAGCCATCATT TGTCTCTTTGAAGTGAGGTAAATGTAGTAAGTGCCTTTGAGTCCTCGTAGTTTTCCTTATTTGTACTAGGGCACCATCTC TTTACCCTAAATTTTAGGTATCAAAAAGAAATTTAGCTTGGAATTTTTTTTGGCAATTTTGTTATCAATTTCCGTCTGGC TCGGTTATAAGTAAATTGCATATGTTCATTCAAGCAGCTGGGAAGCGATGTGGGTAGTTCCATGATTTTATCATTGTGCA ATTATTTTGTCAAATTTGGAGACCACTCATTTCCAGCTTGCAATATATTTAGCCATTGCACCCTATGCCTTAAGCATTGC GGTTGAAGGTTTGATCATTGATCATGGGAATGAAGTATATTTTGTGGTCAGTTGTTTACCGTTTAATGCTAACACCTACG ACAAATGAATTAGTCATCGCTGAT
CDS sequence (LotjaGi6g1v0175300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATGAGGCTGAAAACATATGCTGGTCTGAGCTTGATAGCAACTTTGGCTATCACATATCATGCATTTAACAGTAGGGG TCAGTTTTATCCGGCGATGGTGTATCTCTCGACTTCCAAGATCAGTTTGGTGCTTCTTCTCAACATGGGTTTGGTTATCA TGTGCACTCTTTGGCAATTGACCAAAAAGCTGTTCCTGGGTTCCCTTCGGGAGGCGGAGGTTGAGAGGCTTAATGAGCAG TCGTGGAGGGAGGTTATGGAAATCCTCTTTGCCATTACTATTTTCCGGCAGGACTTCTCGGTTACGTTCCTTGCCATGGT CACCGCGCTGTTATTGATTAAGGCTTTGCATTGGTTGGCACAGAAGAGAGTCGAGTACATCGAGACCACTCCTTCGGTGA CTTGGCTATCCCATGTTCGAATCGTATCTTTTATGGGTTTCCTCCTCCTTCTGGATAGCATTTTCTTATATAGTTCTATG AAACATTTGATAGAAACGTGGCAGGCTTCGGTTTCACTATTCTTTTCTTTCGAGTACATGATATTGGCAACAACAACAGT TTCGATTTTTGTAAAATATATTTTCTATGTCAGTGACATGCTTATGGAGGGACAGTGGGAAAAGAAACCAGTCTTCACAT TTTACCTGGAACTTATCAGAGACTTGCTTCACTTGTCTATGTATCTGTGCTTCTTTTTCTTGATATTTGTGAACTATGGT ATTCCCCTGCACCTAATACGGGAGCTGTACGAGACATTTAGGAATTTCAAAGTTCGTATTGCAGATTACATTAGATATCG TAAGATCACTTCAAATATGAATGATCGCTTTCCAGATGCCACACCTGAAGAGCTTAATGCAAGTGACGCAACCTGCATAA TCTGTCGTGAAGAGATGACTACAGCCAAGAAACTTATATGTGGACATCTTTTTCATGTTCATTGCCTCCGATCATGGCTG GAGCGGCAGCATACTTGCCCTACCTGCCGAGCCTTGGTTGTGCCACCAGAAAATGGAACAACTGTTGCTGGAGGGCAGCA AGGATCACAGTCAGATGGTCACCGGCAGGGAACTGGGACAGCTGGAAGCACAGCTCAAAATGAAGCTGGCAGCGGGATGG CAACTGATAGTTTGAGTCGGCATGAAGCTAGGCTCCAAGCTGCTGCTGCTGCAGCTTCAATATATGAGAAGTCTTATGTT TATCCCTCTGCATCATCTTCTGTATGCTCTCCGGGGCACGCATTTTATACCCCTTCTAGTACTGGATTTAATGGAGAACA AGCTTCCAGTGAACAAGCACAAAAGCAGTTTCTTATCCCTGGTCAACCAACAAATGTATCCTTTCCTCCAATGGGACACT ACAATTTTCTGCCTTCCCAAACGTTTGCAGCCCCTGTGAATTATGGAGAAGCGTTTGGAAATGATCCAAACATCCCAAGC TCTCAGCTGGAAGCTCATAGAAAATTTCTCCGATGGCAGATTGAGGTTTTGGAAAAGCAGTTACGGAATCTTCCAGAGAC AAAAGCTGATGACAGAAGTGTAGATGACGGCACATCATCATCAGATAGCAGAGGCAAGCTTATTACTTCATCGTCATCTG TTTCTGGTCATGTTCACCATGATGAGGAGATTCAAGATGGGAAAGCCTAA
Protein sequence (LotjaGi6g1v0175300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MMRLKTYAGLSLIATLAITYHAFNSRGQFYPAMVYLSTSKISLVLLLNMGLVIMCTLWQLTKKLFLGSLREAEVERLNEQ SWREVMEILFAITIFRQDFSVTFLAMVTALLLIKALHWLAQKRVEYIETTPSVTWLSHVRIVSFMGFLLLLDSIFLYSSM KHLIETWQASVSLFFSFEYMILATTTVSIFVKYIFYVSDMLMEGQWEKKPVFTFYLELIRDLLHLSMYLCFFFLIFVNYG IPLHLIRELYETFRNFKVRIADYIRYRKITSNMNDRFPDATPEELNASDATCIICREEMTTAKKLICGHLFHVHCLRSWL ERQHTCPTCRALVVPPENGTTVAGGQQGSQSDGHRQGTGTAGSTAQNEAGSGMATDSLSRHEARLQAAAAAASIYEKSYV YPSASSSVCSPGHAFYTPSSTGFNGEQASSEQAQKQFLIPGQPTNVSFPPMGHYNFLPSQTFAAPVNYGEAFGNDPNIPS SQLEAHRKFLRWQIEVLEKQLRNLPETKADDRSVDDGTSSSDSRGKLITSSSSVSGHVHHDEEIQDGKA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 7 | 7 | - | – | |
| Phobius | 1 | 27 | 27 | - | – | |
| TMHMM | 7 | 24 | 18 | - | – | |
| Phobius | 8 | 19 | 12 | - | – | |
| Phobius | 20 | 27 | 8 | - | – | |
| Phobius | 28 | 42 | 15 | - | – | |
| TMHMM | 39 | 61 | 23 | - | – | |
| Phobius | 43 | 60 | 18 | - | – | |
| PANTHER | 54 | 473 | 420 | 3.1E-239 | – | |
| PANTHER | 54 | 473 | 420 | 3.1E-239 | – | |
| Phobius | 61 | 98 | 38 | - | – | |
| TMHMM | 99 | 121 | 23 | - | – | |
| Phobius | 99 | 119 | 21 | - | – | |
| Phobius | 120 | 138 | 19 | - | – | |
| TMHMM | 136 | 158 | 23 | - | – | |
| Phobius | 139 | 159 | 21 | - | – | |
| Phobius | 160 | 170 | 11 | - | – | |
| TMHMM | 171 | 193 | 23 | - | – | |
| Phobius | 171 | 195 | 25 | - | – | |
| Phobius | 196 | 224 | 29 | - | – | |
| TMHMM | 224 | 246 | 23 | - | – | |
| Phobius | 225 | 246 | 22 | - | – | |
| Phobius | 247 | 549 | 303 | - | – | |
| Gene3D | 264 | 337 | 74 | 1.0E-21 | ||
| SUPERFAMILY | 272 | 336 | 65 | 3.31E-21 | – | |
| CDD | 289 | 330 | 42 | 1.94118E-27 | – | |
| Pfam | 291 | 330 | 40 | 1.3E-10 | ||
| SMART | 292 | 329 | 38 | 7.6E-4 | ||
| ProSiteProfiles | 292 | 330 | 39 | 12.622 | ||
| MobiDBLite | 340 | 380 | 41 | - | – | |
| MobiDBLite | 340 | 374 | 35 | - | – | |
| MobiDBLite | 503 | 519 | 17 | - | – | |
| MobiDBLite | 503 | 549 | 47 | - | – | |
| MobiDBLite | 520 | 535 | 16 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0175300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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