Domain Predictions — View

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cd18539

Source: CDD

Description

SRP_G

Associated GO terms

Unable to find any GO terms for the transcript with the identifier.

Associated Lotus transcripts 6

Transcript	Name	Description	Predicted domains	Domain count
LotjaGi1g1v0674900_LC.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Signal recognition particle 54 kDa protein; TAIR: AT5G03940.1 chloroplast signal recognition particle 54 kDa subunit; Swiss-Prot: sp\|P37107\|SR54C_ARATH Signal recognition particle 54 kDa protein, chloroplastic; TrEMBL-Plants: tr\|G7KQW9\|G7KQW9_MEDTR Signal recognition particle 54 kDa protein; Found in the gene: LotjaGi1g1v0674900_LC	Domains Coil G3DSA:1.10.260.30 G3DSA:1.20.120.140 G3DSA:3.40.50.300 IPR000897 IPR003593 IPR004125 IPR022941 IPR027417 IPR036891 IPR042101 PF00448 PF02978 PS00300 PTHR11564 PTHR11564:SF30 SM00382 SM00962 SSF47446 SSF52540 cd18539 mobidb-lite	22
LotjaGi1g1v0674900_LC.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Signal recognition particle 54 kDa protein; TAIR: AT5G03940.1 chloroplast signal recognition particle 54 kDa subunit; Swiss-Prot: sp\|P37107\|SR54C_ARATH Signal recognition particle 54 kDa protein, chloroplastic; TrEMBL-Plants: tr\|G7KQW9\|G7KQW9_MEDTR Signal recognition particle 54 kDa protein; Found in the gene: LotjaGi1g1v0674900_LC	Domains Coil G3DSA:1.10.260.30 G3DSA:1.20.120.140 G3DSA:3.40.50.300 IPR000897 IPR003593 IPR004125 IPR022941 IPR027417 IPR036891 IPR042101 PF00448 PF02978 PS00300 PTHR11564 PTHR11564:SF30 SM00382 SM00962 SSF47446 SSF52540 cd18539 mobidb-lite	22
LotjaGi1g1v0674900_LC.3 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Signal recognition particle 54 kDa protein; TAIR: AT5G03940.1 chloroplast signal recognition particle 54 kDa subunit; Swiss-Prot: sp\|P37107\|SR54C_ARATH Signal recognition particle 54 kDa protein, chloroplastic; TrEMBL-Plants: tr\|G7KQW9\|G7KQW9_MEDTR Signal recognition particle 54 kDa protein; Found in the gene: LotjaGi1g1v0674900_LC	Domains Coil G3DSA:1.10.260.30 G3DSA:1.20.120.140 G3DSA:3.40.50.300 IPR000897 IPR003593 IPR004125 IPR022941 IPR027417 IPR036891 IPR042101 PF00448 PF02978 PS00300 PTHR11564 PTHR11564:SF30 SM00382 SM00962 SSF47446 SSF52540 cd18539 mobidb-lite	22
LotjaGi1g1v0674900_LC.4 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Signal recognition particle 54 kDa protein; TAIR: AT5G03940.1 chloroplast signal recognition particle 54 kDa subunit; Swiss-Prot: sp\|P37107\|SR54C_ARATH Signal recognition particle 54 kDa protein, chloroplastic; TrEMBL-Plants: tr\|G7KQW9\|G7KQW9_MEDTR Signal recognition particle 54 kDa protein; Found in the gene: LotjaGi1g1v0674900_LC	Domains Coil G3DSA:1.10.260.30 G3DSA:1.20.120.140 G3DSA:3.40.50.300 IPR000897 IPR003593 IPR004125 IPR022941 IPR027417 IPR036891 IPR042101 PF00448 PF02978 PS00300 PTHR11564 PTHR11564:SF30 SM00382 SM00962 SSF47446 SSF52540 cd18539 mobidb-lite	22
LotjaGi1g1v0674900_LC.5 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Signal recognition particle 54 kDa protein; TAIR: AT5G03940.1 chloroplast signal recognition particle 54 kDa subunit; Swiss-Prot: sp\|P37107\|SR54C_ARATH Signal recognition particle 54 kDa protein, chloroplastic; TrEMBL-Plants: tr\|G7KQW9\|G7KQW9_MEDTR Signal recognition particle 54 kDa protein; Found in the gene: LotjaGi1g1v0674900_LC	Domains Coil G3DSA:1.10.260.30 G3DSA:1.20.120.140 G3DSA:3.40.50.300 IPR000897 IPR003593 IPR004125 IPR022941 IPR027417 IPR036891 IPR042101 PF00448 PF02978 PS00300 PTHR11564 PTHR11564:SF30 SM00382 SM00962 SSF47446 SSF52540 cd18539 mobidb-lite	22
LotjaGi1g1v0675200.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Signal recognition particle 54 kDa protein; TAIR: AT5G03940.1 chloroplast signal recognition particle 54 kDa subunit; Swiss-Prot: sp\|P37107\|SR54C_ARATH Signal recognition particle 54 kDa protein, chloroplastic; TrEMBL-Plants: tr\|A0A0B2P3G8\|A0A0B2P3G8_GLYSO Signal recognition particle 54 kDa protein, chloroplastic; Found in the gene: LotjaGi1g1v0675200	Domains Coil G3DSA:1.10.260.30 G3DSA:1.20.120.140 G3DSA:3.40.50.300 IPR000897 IPR003593 IPR004125 IPR004780 IPR013822 IPR022941 IPR027417 IPR036891 IPR042101 MF_00306 PF00448 PF02881 PF02978 PS00300 PTHR11564 PTHR11564:SF30 SM00382 SM00962 SM00963 SSF47446 SSF52540 TIGR00959 cd18539 mobidb-lite	28

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain	Source	Observations	Saturation (%)
mobidb-lite	MobiDBLite	1	16.67