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GO:0003972

View this GO term in other databases

Overview

Field Value
Namespace Molecular function
Short description RNA ligase (ATP) activity
Full defintion Catalysis of the reaction: ATP + ribonucleotide(n) + ribonucleotide(m) = AMP + diphosphate + ribonucleotide(n+m).
Subterm of

Relationships

The relationship of GO:0003972 with other GO terms.

Relationship type GO terms
Is a
Regulates n.a.
Part of n.a.
Positively regulates n.a.
Negatively regulates n.a.

Ancestor tree

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Additional data

This table contains additional metadata associated with the GO entry's definition field.

Field Value
EC6.5.1.3

Associated Lotus transcripts 12

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Transcript Name Description GO terms GO count
LotjaGi2g1v0363400_LC.1
– RNA ligase isoform 1; TAIR: AT1G07910.2 RNAligase; Swiss-Prot: sp|B9WK98|ARGJ_CANDC Arginine biosynthesis bifunctional protein ArgJ, mitochondrial; TrEMBL-Plants: tr|A0A072UKW9|A0A072UKW9_MEDTR RNA ligase, putative; Found in the gene: LotjaGi2g1v0363400_LC
GO terms
2
LotjaGi2g1v0363400_LC.2
– 3-dehydroquinate synthase; TAIR: AT1G07910.1 RNAligase; Swiss-Prot: sp|Q3IJA2|AROB_PSEHT 3-dehydroquinate synthase; TrEMBL-Plants: tr|A0A072UKW9|A0A072UKW9_MEDTR RNA ligase, putative; Found in the gene: LotjaGi2g1v0363400_LC
GO terms
2
LotjaGi2g1v0363400_LC.3
– RNA ligase isoform 1; TAIR: AT1G07910.2 RNAligase; Swiss-Prot: sp|B9WK98|ARGJ_CANDC Arginine biosynthesis bifunctional protein ArgJ, mitochondrial; TrEMBL-Plants: tr|A0A0R0E4L3|A0A0R0E4L3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0363400_LC
GO terms
2
LotjaGi2g1v0363400_LC.4
– RNA ligase isoform 1; TAIR: AT1G07910.1 RNAligase; Swiss-Prot: sp|Q1RMS5|NXF1_BOVIN Nuclear RNA export factor 1; TrEMBL-Plants: tr|A0A1J7I1E9|A0A1J7I1E9_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0363400_LC
GO terms
2
LotjaGi2g1v0363400_LC.5
– 3-dehydroquinate synthase; TAIR: AT1G07910.1 RNAligase; Swiss-Prot: sp|Q3IJA2|AROB_PSEHT 3-dehydroquinate synthase; TrEMBL-Plants: tr|A0A072UKW9|A0A072UKW9_MEDTR RNA ligase, putative; Found in the gene: LotjaGi2g1v0363400_LC
GO terms
2
LotjaGi2g1v0363400_LC.6
– 3-dehydroquinate synthase; TAIR: AT1G07910.1 RNAligase; Swiss-Prot: sp|Q3IJA2|AROB_PSEHT 3-dehydroquinate synthase; TrEMBL-Plants: tr|A0A072UKW9|A0A072UKW9_MEDTR RNA ligase, putative; Found in the gene: LotjaGi2g1v0363400_LC
GO terms
2
LotjaGi2g1v0363400_LC.7
– RNA ligase isoform 1; TAIR: AT1G07910.2 RNAligase; Swiss-Prot: sp|B9WK98|ARGJ_CANDC Arginine biosynthesis bifunctional protein ArgJ, mitochondrial; TrEMBL-Plants: tr|A0A0R0E4L3|A0A0R0E4L3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0363400_LC
GO terms
2
LotjaGi2g1v0363400_LC.8
– RNA ligase isoform 1; TAIR: AT1G07910.1 RNAligase; Swiss-Prot: sp|Q3IJA2|AROB_PSEHT 3-dehydroquinate synthase; TrEMBL-Plants: tr|A0A072UKW9|A0A072UKW9_MEDTR RNA ligase, putative; Found in the gene: LotjaGi2g1v0363400_LC
GO terms
2
LotjaGi3g1v0364800.1
– RNA ligase isoform 1; TAIR: AT1G07910.2 RNAligase; Swiss-Prot: sp|Q9FR53|TOR_ARATH Serine/threonine-protein kinase TOR; TrEMBL-Plants: tr|A0A072UKW9|A0A072UKW9_MEDTR RNA ligase, putative; Found in the gene: LotjaGi3g1v0364800
GO terms
2
LotjaGi3g1v0364800.2
– RNA ligase isoform 1; TAIR: AT1G07910.2 RNAligase; Swiss-Prot: sp|Q9FR53|TOR_ARATH Serine/threonine-protein kinase TOR; TrEMBL-Plants: tr|A0A0R0E4L3|A0A0R0E4L3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0364800
GO terms
2
LotjaGi3g1v0365400_LC.2
– RNA ligase isoform 1; TAIR: AT1G07910.2 RNAligase; Swiss-Prot: sp|Q6D9J6|DSBD_PECAS Thiol:disulfide interchange protein DsbD; TrEMBL-Plants: tr|A0A0S3SCT5|A0A0S3SCT5_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0365400_LC
GO terms
2
LotjaGi3g1v0365500_LC.1
– RNA ligase, putative; TAIR: AT1G07910.2 RNAligase; Swiss-Prot: sp|Q8W486|Y1491_ARATH Uncharacterized protein At1g04910; TrEMBL-Plants: tr|A0A072UKW9|A0A072UKW9_MEDTR RNA ligase, putative; Found in the gene: LotjaGi3g1v0365500_LC
GO terms
2

Co-occuring GO terms 1

A list of co-occurring GO terms within the L. japonicus gene space:

GO term Namespace Name Observations Saturation (%)
GO:0006388
Biological process TRNA splicing, via endonucleolytic cleavage and ligation 1 8.33