Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

GO:0006388

View this GO term in other databases

Overview

Field Value
Namespace Biological process
Short description TRNA splicing, via endonucleolytic cleavage and ligation
Full defintion Splicing of tRNA substrates via recognition of the folded RNA structure that brings the 5' and 3' splice sites into proximity and cleavage of the RNA at both the 3' and 5' splice sites by an endonucleolytic mechanism, followed by ligation of the exons.
Subterm of

Relationships

The relationship of GO:0006388 with other GO terms.

Relationship type GO terms
Is a
Regulates n.a.
Part of n.a.
Positively regulates n.a.
Negatively regulates n.a.

Ancestor tree

A force layout showing the ancestor tree for GO:0006388, and its immediate children. If you wish to explore the tree dynamically, please use the GO Explorer.

  • Drag and drop nodes to manually position (i.e. fix) them
  • Double click on a node to unfix the node
  • Press Alt and double click to visit the page containing further details of a GO term
  • Right clicking on a node will reveal a context menu

Controls

Force layout

Every force layout is different—we have picked a set of parameters which suits most GO ancestor tree chart well. If you mess something up—don't worry: hitting the "reset view" button above will reset the chart to its default layout.

Additional data

This table contains additional metadata associated with the GO entry's definition field.

Field Value
GOCkrc
ISBN
The RNA WorldThe RNA World

Thomas R. Cech,Raymond F. Gesteland,John Fuller Atkins · ISBN: 0879695897

, 1999 · 0 pages

As both an informational molecule and a catalyst, RNA may hold clues to the emergence of genetic self-replication and the origins of life. The first, 1993 edition of this important work was acclaimed as unique and authoritative. The new edition has been revised, updated, and extended, and offers a completely current perspective on the modern world of RNA and the light it sheds on a prebiotic era perhaps dominated by this extraordinarily versatile molecule. This book is essential reading for everyone interested in the biology of nucleic acids, and is a valuable resource for teaching as well as investigative science.

PMID
tRNA splicing.Abelson J, Trotta CR, Li H
J Biol Chem. 1998 May 22; 273 (21): 12685–8.PMID: 9582290

Associated Lotus transcripts 19

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Transcript Name Description GO terms GO count
Lj1g3v3948040.1
– PREDICTED: tRNA-splicing endonuclease subunit Sen2-1-like [Cicer arietinum] gi|502109005|ref|XP_004493544.1|
GO terms
2
Lj1g3v4290130.1
– PREDICTED: tRNA-splicing endonuclease subunit Sen2-1-like [Cicer arietinum] gi|502109005|ref|XP_004493544.1|
GO terms
2
Lj3g3v2735060.1
– PREDICTED: tRNA 2'-phosphotransferase 1-like isoform X1 [Cicer arietinum] gi|502146539|ref|XP_004506497.1|
GO terms
2
LotjaGi1g1v0639100.1
– TRNA-splicing endonuclease subunit Sen2; TAIR: AT3G45590.1 splicing endonuclease 1; Swiss-Prot: sp|Q9M1E8|SEN21_ARATH tRNA-splicing endonuclease subunit Sen2-1; TrEMBL-Plants: tr|V7CYA6|V7CYA6_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0639100
GO terms
2
LotjaGi1g1v0723100_LC.1
– TRNA-splicing endonuclease subunit Sen2; TAIR: AT3G45590.1 splicing endonuclease 1; Swiss-Prot: sp|Q9M1E8|SEN21_ARATH tRNA-splicing endonuclease subunit Sen2-1; TrEMBL-Plants: tr|V7CYA6|V7CYA6_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0723100_LC
GO terms
2
LotjaGi2g1v0363400_LC.1
– RNA ligase isoform 1; TAIR: AT1G07910.2 RNAligase; Swiss-Prot: sp|B9WK98|ARGJ_CANDC Arginine biosynthesis bifunctional protein ArgJ, mitochondrial; TrEMBL-Plants: tr|A0A072UKW9|A0A072UKW9_MEDTR RNA ligase, putative; Found in the gene: LotjaGi2g1v0363400_LC
GO terms
2
LotjaGi2g1v0363400_LC.2
– 3-dehydroquinate synthase; TAIR: AT1G07910.1 RNAligase; Swiss-Prot: sp|Q3IJA2|AROB_PSEHT 3-dehydroquinate synthase; TrEMBL-Plants: tr|A0A072UKW9|A0A072UKW9_MEDTR RNA ligase, putative; Found in the gene: LotjaGi2g1v0363400_LC
GO terms
2
LotjaGi2g1v0363400_LC.3
– RNA ligase isoform 1; TAIR: AT1G07910.2 RNAligase; Swiss-Prot: sp|B9WK98|ARGJ_CANDC Arginine biosynthesis bifunctional protein ArgJ, mitochondrial; TrEMBL-Plants: tr|A0A0R0E4L3|A0A0R0E4L3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0363400_LC
GO terms
2
LotjaGi2g1v0363400_LC.4
– RNA ligase isoform 1; TAIR: AT1G07910.1 RNAligase; Swiss-Prot: sp|Q1RMS5|NXF1_BOVIN Nuclear RNA export factor 1; TrEMBL-Plants: tr|A0A1J7I1E9|A0A1J7I1E9_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0363400_LC
GO terms
2
LotjaGi2g1v0363400_LC.5
– 3-dehydroquinate synthase; TAIR: AT1G07910.1 RNAligase; Swiss-Prot: sp|Q3IJA2|AROB_PSEHT 3-dehydroquinate synthase; TrEMBL-Plants: tr|A0A072UKW9|A0A072UKW9_MEDTR RNA ligase, putative; Found in the gene: LotjaGi2g1v0363400_LC
GO terms
2
LotjaGi2g1v0363400_LC.6
– 3-dehydroquinate synthase; TAIR: AT1G07910.1 RNAligase; Swiss-Prot: sp|Q3IJA2|AROB_PSEHT 3-dehydroquinate synthase; TrEMBL-Plants: tr|A0A072UKW9|A0A072UKW9_MEDTR RNA ligase, putative; Found in the gene: LotjaGi2g1v0363400_LC
GO terms
2
LotjaGi2g1v0363400_LC.7
– RNA ligase isoform 1; TAIR: AT1G07910.2 RNAligase; Swiss-Prot: sp|B9WK98|ARGJ_CANDC Arginine biosynthesis bifunctional protein ArgJ, mitochondrial; TrEMBL-Plants: tr|A0A0R0E4L3|A0A0R0E4L3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0363400_LC
GO terms
2
LotjaGi2g1v0363400_LC.8
– RNA ligase isoform 1; TAIR: AT1G07910.1 RNAligase; Swiss-Prot: sp|Q3IJA2|AROB_PSEHT 3-dehydroquinate synthase; TrEMBL-Plants: tr|A0A072UKW9|A0A072UKW9_MEDTR RNA ligase, putative; Found in the gene: LotjaGi2g1v0363400_LC
GO terms
2
LotjaGi3g1v0364800.1
– RNA ligase isoform 1; TAIR: AT1G07910.2 RNAligase; Swiss-Prot: sp|Q9FR53|TOR_ARATH Serine/threonine-protein kinase TOR; TrEMBL-Plants: tr|A0A072UKW9|A0A072UKW9_MEDTR RNA ligase, putative; Found in the gene: LotjaGi3g1v0364800
GO terms
2
LotjaGi3g1v0364800.2
– RNA ligase isoform 1; TAIR: AT1G07910.2 RNAligase; Swiss-Prot: sp|Q9FR53|TOR_ARATH Serine/threonine-protein kinase TOR; TrEMBL-Plants: tr|A0A0R0E4L3|A0A0R0E4L3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0364800
GO terms
2
LotjaGi3g1v0365400_LC.2
– RNA ligase isoform 1; TAIR: AT1G07910.2 RNAligase; Swiss-Prot: sp|Q6D9J6|DSBD_PECAS Thiol:disulfide interchange protein DsbD; TrEMBL-Plants: tr|A0A0S3SCT5|A0A0S3SCT5_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0365400_LC
GO terms
2
LotjaGi3g1v0365500_LC.1
– RNA ligase, putative; TAIR: AT1G07910.2 RNAligase; Swiss-Prot: sp|Q8W486|Y1491_ARATH Uncharacterized protein At1g04910; TrEMBL-Plants: tr|A0A072UKW9|A0A072UKW9_MEDTR RNA ligase, putative; Found in the gene: LotjaGi3g1v0365500_LC
GO terms
2
LotjaGi3g1v0432800.4
– RNA 2'-phosphotransferase; TAIR: AT2G45330.2 RNA 2'-phosphotransferase, Tpt1 / KptA family; Swiss-Prot: sp|Q5EAR5|TRPT1_DANRE tRNA 2'-phosphotransferase 1; TrEMBL-Plants: tr|I3SLL1|I3SLL1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0432800
GO terms
2
LotjaGi3g1v0432800.5
– RNA 2'-phosphotransferase isoform 1; TAIR: AT2G45330.1 RNA 2'-phosphotransferase, Tpt1 / KptA family; Swiss-Prot: sp|O14045|TPT1_SCHPO Putative tRNA 2'-phosphotransferase; TrEMBL-Plants: tr|I3S0W1|I3S0W1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0432800
GO terms
2

Co-occuring GO terms 1

A list of co-occurring GO terms within the L. japonicus gene space:

GO term Namespace Name Observations Saturation (%)
GO:0016772
Molecular function Transferase activity, transferring phosphorus-containing groups 1 5.26