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Field | Value |
---|---|
Namespace | Molecular function |
Short description | Lysine-acetylated histone binding |
Full defintion | Interacting selectively and non-covalently with a histone in which a lysine residue has been modified by acetylation. |
Subterm of |
The relationship of GO:0070577 with other GO terms.
Relationship type | GO terms |
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Is a | |
Regulates | n.a. |
Part of | n.a. |
Positively regulates | n.a. |
Negatively regulates | n.a. |
A force layout showing the ancestor tree for GO:0070577, and its immediate children. If you wish to explore the tree dynamically, please use the GO Explorer.
This table contains additional metadata associated with the GO entry's definition field.
Field | Value |
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GOC | rl |
PMID | Structural ramification for acetyl-lysine recognition by the bromodomain of human BRG1 protein, a central ATPase of the SWI/SNF remodeling complex. Chembiochem. 2007 Jul 23; 8 (11): 1308–16.PMID: 17582821 Bromodomains represent an extensive family of evolutionarily conserved domains that are found in many chromatin-associated proteins such as histone acetyltransferases (HAT) and subunits of ATP-dependent chromatin-remodeling complexes. These domains are associated with acetylated lysine residues that bind both in vivo and in vitro; for example, they bind to the N-acetylated lysines of the histone tail of nucleosomes. In this report, we determined the structure of the bromodomain from human brahma-related gene 1 (BRG1) protein, a subunit of an ATP-dependent switching/sucrose nonfermenting (SWI/SNF) remodeling complex, and have also characterized its in vitro interaction with N-acetylated lysine peptides from histones. In addition to a typical all-alpha-helical fold that was observed in the bromodomains, we observed for the first time a small beta-sheet in the ZA loop region of the BRG1 protein. The BRG1 bromodomain exhibited binding, albeit weak, to acetylated peptides that were derived from histones H3 and H4. We have compared the acetyl-lysine binding sites of BRG1 bromodomain with the yGCN5 (general control of amino acid biosynthesis). By modeling the acetylated-lysine peptide into the BRG1 bromodomain structure, we were able to explain the weak binding of acetylated-lysine peptides to this bromodomain. |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Transcript | Name | Description | GO terms | GO count |
---|---|---|---|---|
– | Proteasome activator subunit 4; TAIR: AT3G13330.1 proteasome activating protein 200; Swiss-Prot: sp|F4JC97|PSME4_ARATH Proteasome activator subunit 4; TrEMBL-Plants: tr|I1N058|I1N058_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0136800 | 3 | ||
– | Proteasome activator subunit 4; TAIR: AT3G13330.1 proteasome activating protein 200; Swiss-Prot: sp|F4JC97|PSME4_ARATH Proteasome activator subunit 4; TrEMBL-Plants: tr|I1N058|I1N058_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0136800 | 3 | ||
– | Proteasome activator subunit 4; TAIR: AT3G13330.1 proteasome activating protein 200; Swiss-Prot: sp|F4JC97|PSME4_ARATH Proteasome activator subunit 4; TrEMBL-Plants: tr|I1N058|I1N058_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0136800 | 3 |
A list of co-occurring GO terms within the L. japonicus gene space:
GO term | Namespace | Name | Observations | Saturation (%) |
---|---|---|---|---|
Molecular function | Proteasome binding | 1 | 33.33 |