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GO:0042393

View this GO term in other databases

Overview

Field Value
Namespace Molecular function
Short description Histone binding
Full defintion Interacting selectively and non-covalently with a histone, any of a group of water-soluble proteins found in association with the DNA of eukaroytic chromosomes. They are involved in the condensation and coiling of chromosomes during cell division and have also been implicated in nonspecific suppression of gene activity.
Subterm of

Relationships

The relationship of GO:0042393 with other GO terms.

Relationship type GO terms
Is a
Regulates n.a.
Part of n.a.
Positively regulates n.a.
Negatively regulates n.a.

Ancestor tree

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Additional data

This table contains additional metadata associated with the GO entry's definition field.

Field Value
GOCjl

Associated Lotus transcripts 39

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Transcript Name Description GO terms GO count
Lj0g3v0359919.1
– PREDICTED: PHD finger protein ALFIN-LIKE 1-like [Cicer arietinum] gi|502147358|ref|XP_004506752.1|
GO terms
2
Lj1g3v0052650.1
– PREDICTED: transcription regulatory protein SNF2-like [Glycine max] gi|356541302|ref|XP_003539117.1|
GO terms
1
Lj1g3v1787670.1
– PHD4 [Glycine max] gi|351725633|ref|NP_001237867.1|
GO terms
2
Lj1g3v2326720.1
– PREDICTED: PHD finger protein ALFIN-LIKE 1-like [Cicer arietinum] gi|502147358|ref|XP_004506752.1|
GO terms
2
Lj3g3v0338960.1
– PREDICTED: PHD finger protein ALFIN-LIKE 4-like [Cicer arietinum] gi|502081422|ref|XP_004486862.1|
GO terms
2
Lj3g3v2658830.1
– PHD1 [Glycine max] gi|351727220|ref|NP_001237921.1|
GO terms
2
Lj4g3v0037550.1
– PHD5 [Glycine max] gi|351726166|ref|NP_001237885.1|
GO terms
2
Lj4g3v0037550.2
– PHD5 [Glycine max] gi|351726166|ref|NP_001237885.1|
GO terms
2
Lj4g3v0048630.1
– PHD5 [Glycine max] gi|351726166|ref|NP_001237885.1|
GO terms
2
Lj4g3v2179230.1
– PREDICTED: PHD finger protein ALFIN-LIKE 5-like [Vitis vinifera] gi|359484453|ref|XP_003633111.1|
GO terms
2
Lj4g3v2374790.1
– Helicase swr1 [Medicago truncatula] gi|357478579|ref|XP_003609575.1|
GO terms
1
Lj4g3v2374790.2
– Helicase swr1 [Medicago truncatula] gi|357478579|ref|XP_003609575.1|
GO terms
1
Lj5g3v0455900.1
– PHD4 [Glycine max] gi|351725633|ref|NP_001237867.1|
GO terms
2
Lj5g3v2058550.1
– PREDICTED: transcription regulatory protein SNF2-like [Glycine max] gi|356534230|ref|XP_003535660.1|
GO terms
1
Lj6g3v1211460.1
– PREDICTED: PHD finger protein ALFIN-LIKE 5-like isoform 2 [Cucumis sativus] gi|449452921|ref|XP_004144207.1|
GO terms
2
Lj6g3v1211470.1
– PHD finger protein [Zea mays] gi|195637710|gb|ACG38323.1|
GO terms
2
Lj6g3v1916160.1
– PREDICTED: chromatin structure-remodeling complex protein SYD-like isoform X2 [Cicer arietinum] gi|502151178|ref|XP_004508316.1|
GO terms
1
Lj6g3v1916160.2
– PREDICTED: chromatin structure-remodeling complex protein SYD-like isoform X2 [Cicer arietinum] gi|502151178|ref|XP_004508316.1|
GO terms
1
LotjaGi1g1v0369600.1
– PHD finger alfin-like protein; TAIR: AT5G20510.1 alfin-like 5; Swiss-Prot: sp|Q5XEM9|ALFL5_ARATH PHD finger protein ALFIN-LIKE 5; TrEMBL-Plants: tr|I3T3M7|I3T3M7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0369600
GO terms
2
LotjaGi1g1v0369600.3
– PHD finger alfin-like protein; TAIR: AT5G20510.1 alfin-like 5; Swiss-Prot: sp|Q5XEM9|ALFL5_ARATH PHD finger protein ALFIN-LIKE 5; TrEMBL-Plants: tr|I3T3M7|I3T3M7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0369600
GO terms
2
LotjaGi1g1v0441700.1
– PHD finger alfin-like protein; TAIR: AT5G05610.1 alfin-like 1; Swiss-Prot: sp|A2Y0Q2|ALFL1_ORYSI PHD finger protein ALFIN-LIKE 1; TrEMBL-Plants: tr|C6T7X8|C6T7X8_SOYBN Putative uncharacterized protein; Found in the gene: LotjaGi1g1v0441700
GO terms
2
LotjaGi2g1v0457100.1
– DNA/RNA helicase protein; TAIR: AT3G06010.1 SNF2/Brahma-type chromatin-remodeling protein CHR12; Swiss-Prot: sp|F4J9M5|CHR12_ARATH Probable ATP-dependent DNA helicase CHR12; TrEMBL-Plants: tr|I1LFS4|I1LFS4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0457100
GO terms
1
LotjaGi3g1v0029200.1
– PHD finger alfin-like protein; TAIR: AT3G42790.1 alfin-like 3; Swiss-Prot: sp|Q9M2B4|ALFL3_ARATH PHD finger protein ALFIN-LIKE 3; TrEMBL-Plants: tr|I3T930|I3T930_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0029200
GO terms
2
LotjaGi3g1v0208200.1
– PHD finger alfin-like protein; TAIR: AT5G05610.1 alfin-like 1; Swiss-Prot: sp|A2Y0Q2|ALFL1_ORYSI PHD finger protein ALFIN-LIKE 1; TrEMBL-Plants: tr|I3SZL0|I3SZL0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0208200
GO terms
2
LotjaGi3g1v0417800.1
– PHD finger alfin-like protein; TAIR: AT5G20510.1 alfin-like 5; Swiss-Prot: sp|Q5XEM9|ALFL5_ARATH PHD finger protein ALFIN-LIKE 5; TrEMBL-Plants: tr|I1MJY1|I1MJY1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0417800
GO terms
2
LotjaGi3g1v0417800.2
– PHD finger alfin-like protein; TAIR: AT5G20510.1 alfin-like 5; Swiss-Prot: sp|Q5XEM9|ALFL5_ARATH PHD finger protein ALFIN-LIKE 5; TrEMBL-Plants: tr|A0A151T9G0|A0A151T9G0_CAJCA PHD finger protein family; Found in the gene: LotjaGi3g1v0417800
GO terms
2
LotjaGi4g1v0002700.1
– PHD finger alfin-like protein; TAIR: AT2G02470.1 alfin-like 6; Swiss-Prot: sp|Q40359|ALFIN_MEDSA PHD finger protein Alfin1; TrEMBL-Plants: tr|K7L425|K7L425_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0002700
GO terms
2
LotjaGi4g1v0327700.1
– PHD finger alfin-like protein; TAIR: AT5G20510.1 alfin-like 5; Swiss-Prot: sp|Q5XEM9|ALFL5_ARATH PHD finger protein ALFIN-LIKE 5; TrEMBL-Plants: tr|I3SD19|I3SD19_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0327700
GO terms
2
LotjaGi4g1v0327700.2
– PHD finger alfin-like protein; TAIR: AT5G20510.3 alfin-like 5; Swiss-Prot: sp|Q7XUW3|ALFL4_ORYSJ PHD finger protein ALFIN-LIKE 4; TrEMBL-Plants: tr|I3SD19|I3SD19_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0327700
GO terms
2
LotjaGi4g1v0346800.1
– Chromatin remodeling 1; TAIR: AT2G28290.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein; Swiss-Prot: sp|F4IHS2|SYD_ARATH Chromatin structure-remodeling complex protein SYD; TrEMBL-Plants: tr|V7CA49|V7CA49_PHAVU Uncharacterized protein; Found in the gene: LotjaGi4g1v0346800
GO terms
1
LotjaGi5g1v0047100.1
– PHD finger alfin-like protein; TAIR: AT5G20510.1 alfin-like 5; Swiss-Prot: sp|Q5XEM9|ALFL5_ARATH PHD finger protein ALFIN-LIKE 5; TrEMBL-Plants: tr|B9IKC9|B9IKC9_POPTR PHD finger family protein; Found in the gene: LotjaGi5g1v0047100
GO terms
2
LotjaGi5g1v0047100.2
– PHD finger alfin-like protein; TAIR: AT5G20510.1 alfin-like 5; Swiss-Prot: sp|Q5XEM9|ALFL5_ARATH PHD finger protein ALFIN-LIKE 5; TrEMBL-Plants: tr|B9IKC9|B9IKC9_POPTR PHD finger family protein; Found in the gene: LotjaGi5g1v0047100
GO terms
2
LotjaGi5g1v0047100.3
– PHD finger alfin-like protein; TAIR: AT3G42790.1 alfin-like 3; Swiss-Prot: sp|Q9M2B4|ALFL3_ARATH PHD finger protein ALFIN-LIKE 3; TrEMBL-Plants: tr|D7TCI6|D7TCI6_VITVI Putative uncharacterized protein; Found in the gene: LotjaGi5g1v0047100
GO terms
2
LotjaGi5g1v0316700.1
– DNA/RNA helicase protein; TAIR: AT3G06010.1 SNF2/Brahma-type chromatin-remodeling protein CHR12; Swiss-Prot: sp|F4J9M5|CHR12_ARATH Probable ATP-dependent DNA helicase CHR12; TrEMBL-Plants: tr|A0A0S3SMF5|A0A0S3SMF5_PHAAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0316700
GO terms
1
LotjaGi5g1v0316700.2
– DNA/RNA helicase protein; TAIR: AT3G06010.1 SNF2/Brahma-type chromatin-remodeling protein CHR12; Swiss-Prot: sp|F4J9M5|CHR12_ARATH Probable ATP-dependent DNA helicase CHR12; TrEMBL-Plants: tr|K7LLB3|K7LLB3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0316700
GO terms
1
LotjaGi5g1v0316700.3
– DNA/RNA helicase protein; TAIR: AT3G06010.1 SNF2/Brahma-type chromatin-remodeling protein CHR12; Swiss-Prot: sp|F4J9M5|CHR12_ARATH Probable ATP-dependent DNA helicase CHR12; TrEMBL-Plants: tr|A0A0R0I5I9|A0A0R0I5I9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0316700
GO terms
1
LotjaGi5g1v0316700.4
– DNA/RNA helicase protein; TAIR: AT3G06010.1 SNF2/Brahma-type chromatin-remodeling protein CHR12; Swiss-Prot: sp|F4J9M5|CHR12_ARATH Probable ATP-dependent DNA helicase CHR12; TrEMBL-Plants: tr|A0A0L9TZW8|A0A0L9TZW8_PHAAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0316700
GO terms
1
LotjaGi5g1v0316700.5
– DNA/RNA helicase protein; TAIR: AT3G06010.1 SNF2/Brahma-type chromatin-remodeling protein CHR12; Swiss-Prot: sp|F4J9M5|CHR12_ARATH Probable ATP-dependent DNA helicase CHR12; TrEMBL-Plants: tr|I1NGB6|I1NGB6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0316700
GO terms
1
LotjaGi6g1v0227400.1
– PHD finger alfin-like protein; TAIR: AT3G42790.1 alfin-like 3; Swiss-Prot: sp|Q7XUW3|ALFL4_ORYSJ PHD finger protein ALFIN-LIKE 4; TrEMBL-Plants: tr|A0A1J7I2R7|A0A1J7I2R7_LUPAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0227400
GO terms
2

Co-occuring GO terms 1

A list of co-occurring GO terms within the L. japonicus gene space:

GO term Namespace Name Observations Saturation (%)
GO:0042393
Molecular function Histone binding 1 2.56