Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

Lj0g3v0020149.1

Overview

Field Value
Gene ID Lj0g3v0020149
Transcript ID Lj0g3v0020149.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: geraniol 8-hydroxylase-like [Cicer arietinum] gi|502147285|ref|XP_004506725.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
ProSiteProfiles
PS51257
1 16 16 5 –
Phobius
NON_CYTOPLASMIC_DOMAIN
1 5 5 – –
PANTHER
PTHR24298:SF121
4 494 491 4.60E-254 –
PANTHER
PTHR24298
4 494 491 4.60E-254 –
Phobius
TRANSMEMBRANE
6 24 19 – –
Phobius
CYTOPLASMIC_DOMAIN
25 495 471 – –
Gene3D
G3DSA:1.10.630.10
27 493 467 2.10E-134
IPR001128
Pfam
PF00067
35 484 450 3.60E-106
IPR001128
SUPERFAMILY
SSF48264
35 492 458 4.71E-121
IPR001128
PRINTS
PR00463
63 82 20 1.30E-44
IPR002401
PRINTS
PR00463
289 306 18 1.30E-44
IPR002401
PRINTS
PR00385
300 317 18 1.80E-12
IPR001128
PRINTS
PR00463
309 335 27 1.30E-44
IPR002401
PRINTS
PR00463
352 370 19 1.30E-44
IPR002401
PRINTS
PR00385
353 364 12 1.80E-12
IPR001128
PRINTS
PR00463
392 416 25 1.30E-44
IPR002401
PRINTS
PR00463
428 438 11 1.30E-44
IPR002401
PRINTS
PR00385
429 438 10 1.80E-12
IPR001128
ProSitePatterns
PS00086
431 440 10 –
IPR017972
PRINTS
PR00463
438 461 24 1.30E-44
IPR002401

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005506
Molecular function Iron ion binding Interacting selectively and non-covalently with iron (Fe) ions.
Subterm of
GO:0016705
Molecular function Oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from each of two donors, and molecular oxygen is reduced or incorporated into a donor.
Subterm of
GO:0020037
Molecular function Heme binding Interacting selectively and non-covalently with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring.
Subterm of
GO:0055114
Biological process Oxidation-reduction process A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
Subterm of

Genome browser

LORE1 insertions 3

Expression data

Expression pattern

Expression pattern of Lj0g3v0020149.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0020149.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.