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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • PS51257
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 549 results. Now displaying 1 of 11 with 50 rows per page. This search has taken 0.154s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj4g3v0281040.1
LjFls2 flagellin-sensing 2-like protein [Lotus japonicus] gi|355346200|gb|AER60531.1| chr4 3284600 3289068 +
1 domain prediction
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Lj6g3v1249630.1
LjCkx4 FAD linked oxidase, N-terminal [Medicago truncatula] gi|124360772|gb|ABN08744.1| chr6 15350730 15354064 -
1 domain prediction
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Lj0g3v0003509.1
n.a. hypothetical protein PTSG_01573 [Salpingoeca sp]. ATCC 50818] gi|326435422|gb|EGD80992.1| chr0 1269174 1269762 -
1 domain prediction
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Lj0g3v0012359.1
n.a. n.a. chr0 4663987 4664162 +
1 domain prediction
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Lj0g3v0020149.1
n.a. PREDICTED: geraniol 8-hydroxylase-like [Cicer arietinum] gi|502147285|ref|XP_004506725.1| chr0 8060534 8062908 +
1 domain prediction
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Lj0g3v0021359.1
n.a. n.a. chr0 8673992 8674196 +
1 domain prediction
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Lj0g3v0038519.1
n.a. DNA-directed RNA polymerase isoform 1 [Theobroma cacao] gi|508709656|gb|EOY01553.1| chr0 12523933 12525903 +
1 domain prediction
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Lj0g3v0040769.1
n.a. Midasin [Wickerhamomyces ciferrii] gi|406607295|emb|CCH41350.1| chr0 13326238 13327070 -
1 domain prediction
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Lj0g3v0043149.1
n.a. ATPase [Helicobacter pylori] gi|446037740|ref|WP_000115595.1| chr0 14177879 14178307 +
1 domain prediction
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Lj0g3v0048029.1
n.a. n.a. chr0 16117760 16118254 -
1 domain prediction
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Lj0g3v0048609.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At4g21300-like [Fragaria vesca subsp]. vesca] gi|470113906|ref|XP_004293160.1| chr0 16406487 16410053 +
1 domain prediction
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Lj0g3v0055639.1
n.a. n.a. chr0 17982718 17984147 +
1 domain prediction
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Lj0g3v0055639.2
n.a. n.a. chr0 17983635 17984147 +
1 domain prediction
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Lj0g3v0058719.2
n.a. n.a. chr0 19327285 19331218 +
1 domain prediction
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Lj0g3v0060629.1
n.a. PREDICTED: beta-galactosidase 1-like [Glycine max] gi|356526021|ref|XP_003531618.1| chr0 20224714 20226884 -
1 domain prediction
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Lj0g3v0061669.1
n.a. Pectinesterase inhibitor [Medicago truncatula] gi|357513037|ref|XP_003626807.1| chr0 20678264 20678856 -
1 domain prediction
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Lj0g3v0063279.1
n.a. PREDICTED: PI-PLC X domain-containing protein At5g67130-like isoform X2 [Cicer arietinum] gi|502152866|ref|XP_004509132.1| chr0 21428213 21432976 +
1 domain prediction
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Lj0g3v0065889.1
n.a. n.a. chr0 23039881 23040694 +
1 domain prediction
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Lj0g3v0069669.1
n.a. Uncharacterized protein TCM_015988 [Theobroma cacao] gi|508777115|gb|EOY24371.1| chr0 25258008 25260867 +
1 domain prediction
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Lj0g3v0071629.1
n.a. n.a. chr0 26329862 26330418 -
1 domain prediction
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Lj0g3v0077359.1
n.a. n.a. chr0 29669695 29670184 +
1 domain prediction
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Lj0g3v0080049.1
n.a. GJ23966 [Drosophila virilis] gi|195389811|ref|XP_002053567.1| chr0 30984115 30984610 +
1 domain prediction
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Lj0g3v0080189.1
n.a. hypothetical protein VP0796 [Vibrio parahaemolyticus RIMD 2210633] gi|28897570|ref|NP_797175.1| chr0 31084299 31085045 +
1 domain prediction
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Lj0g3v0080919.1
n.a. PREDICTED: aspartic proteinase oryzasin-1-like [Glycine max] gi|356556454|ref|XP_003546541.1| chr0 31482940 31486875 +
1 domain prediction
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Lj0g3v0082279.1
n.a. n.a. chr0 32300530 32303368 +
1 domain prediction
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Lj0g3v0083479.1
n.a. Os02g0168300 [Oryza sativa Japonica Group] gi|115444465|ref|NP_001046012.1| chr0 33079336 33082923 +
1 domain prediction
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Lj0g3v0085579.1
n.a. Myelin-associated oligodendrocyte basic protein isoform 1 [Theobroma cacao] gi|508719239|gb|EOY11136.1| chr0 34253301 34256474 +
1 domain prediction
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Lj0g3v0088719.1
n.a. hypothetical protein Cphy_0725 [Clostridium phytofermentans ISDg] gi|160878883|ref|YP_001557851.1| chr0 36331354 36332212 +
1 domain prediction
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Lj0g3v0093359.1
n.a. n.a. chr0 39061955 39062771 +
1 domain prediction
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Lj0g3v0093949.1
n.a. hypothetical protein DAPPUDRAFT_112140 [Daphnia pulex] gi|321460005|gb|EFX71052.1| chr0 39437765 39438452 -
1 domain prediction
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Lj0g3v0094289.1
n.a. n.a. chr0 39606238 39607117 -
1 domain prediction
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Lj0g3v0094389.1
n.a. PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At1g50610-like [Cicer arietinum] gi|502089636|ref|XP_004488972.1| chr0 39688550 39691233 +
1 domain prediction
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Lj0g3v0098469.1
n.a. n.a. chr0 41683000 41683247 +
1 domain prediction
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Lj0g3v0101469.1
n.a. n.a. chr0 43062200 43062525 -
1 domain prediction
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Lj0g3v0104199.1
n.a. lipoprotein [Clostridium botulinum F str]. Langeland] gi|153940111|ref|YP_001389748.1| chr0 44539994 44541452 +
1 domain prediction
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Lj0g3v0110739.1
n.a. n.a. chr0 48053477 48054030 -
1 domain prediction
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Lj0g3v0115539.1
n.a. hypothetical protein ACD_12C00171G0007 [uncultured bacterium] gi|406996812|gb|EKE15060.1| chr0 50786466 50787546 -
1 domain prediction
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Lj0g3v0117169.1
n.a. n.a. chr0 51640982 51641584 -
1 domain prediction
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Lj0g3v0120569.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At1g77170-like [Cicer arietinum] gi|502138621|ref|XP_004503475.1| chr0 53555319 53556197 -
1 domain prediction
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Lj0g3v0128299.1
n.a. n.a. chr0 57947950 57948166 +
1 domain prediction
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Lj0g3v0130329.1
n.a. PREDICTED: alpha-galactosidase-like [Cicer arietinum] gi|502104561|ref|XP_004492578.1| chr0 59074257 59078174 -
1 domain prediction
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Lj0g3v0133669.1
n.a. n.a. chr0 61211456 61212038 +
1 domain prediction
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Lj0g3v0134599.1
n.a. PREDICTED: ATPase family AAA domain-containing protein 1-like [Solanum lycopersicum] gi|460390712|ref|XP_004240969.1| chr0 61757708 61765976 +
1 domain prediction
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Lj0g3v0162759.1
n.a. glycine-rich protein [Onobrychis viciifolia] gi|2565429|gb|AAB82000.1| chr0 76839822 76840571 -
1 domain prediction
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Lj0g3v0167159.1
n.a. Pentatricopeptide repeat (PPR) superfamily protein [Theobroma cacao] gi|508716385|gb|EOY08282.1| chr0 79454618 79455250 +
1 domain prediction
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Lj0g3v0169209.1
n.a. n.a. chr0 80849642 80850030 +
1 domain prediction
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Lj0g3v0178009.1
n.a. n.a. chr0 86187186 86187706 -
1 domain prediction
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Lj0g3v0182149.1
n.a. glycine betaine/L-proline ABC transporter ATPase [Desulfovibrio desulfuricans subsp]. desulfuricans str. ATCC 27774] gi|220904098|ref|YP_002479410.1| chr0 88978279 88980810 +
1 domain prediction
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Lj0g3v0186869.1
n.a. phosphate transporter, partial [Funneliformis mosseae] gi|340796283|gb|AEK70397.1| chr0 91153633 91153855 +
1 domain prediction
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Lj0g3v0191079.1
n.a. PREDICTED: peroxidase 5-like [Cicer arietinum] gi|502117605|ref|XP_004495876.1| chr0 93425704 93426545 -
1 domain prediction
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