Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

Lj0g3v0043729.2

Overview

Field Value
Gene ID Lj0g3v0043729
Transcript ID Lj0g3v0043729.2
Related isoforms 1
Lotus japonicus genome version MG20 v3.0
Description cyclic nucleotide-gated ion channel 18 [Arabidopsis lyrata subsp]. lyrata] gi|297811623|ref|XP_002873695.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR10217:SF479
1 257 257 2.40E-211 –
PANTHER
PTHR10217
1 257 257 2.40E-211 –
SUPERFAMILY
SSF51206
7 202 196 4.06E-39
IPR018490
Gene3D
G3DSA:1.10.287.630
13 68 56 1.70E-12 –
Gene3D
G3DSA:2.60.120.10
75 193 119 2.40E-27
IPR014710
ProSiteProfiles
PS50042
77 207 131 11.902
IPR000595
SMART
SM00100
77 208 132 1.00E-12
IPR000595
CDD
cd00038
77 208 132 4.48E-20 –
Pfam
PF00027
100 187 88 4.80E-10
IPR000595
PANTHER
PTHR10217:SF479
277 325 49 2.40E-211 –
PANTHER
PTHR10217
277 325 49 2.40E-211 –
MobiDBLite
mobidb-lite
294 325 32 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

Genome browser

LORE1 insertions 2

Expression data

Expression pattern

Expression pattern of Lj0g3v0043729.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0043729.2, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.