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Lj0g3v0059079.1

Overview

Field Value
Gene ID Lj0g3v0059079
Transcript ID Lj0g3v0059079.1
Lotus japonicus genome version MG20 v3.0
Description Heat shock protein [Medicago truncatula] gi|357448685|ref|XP_003594618.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR19375:SF227
1 480 480 1.30E-255 –
PANTHER
PTHR19375
1 480 480 1.30E-255 –
SUPERFAMILY
SSF53067
3 101 99 3.45E-29 –
Pfam
PF00012
3 200 198 1.20E-81
IPR013126
Gene3D
G3DSA:3.30.420.40
15 116 102 7.90E-44 –
PRINTS
PR00301
56 76 21 8.50E-17
IPR013126
SUPERFAMILY
SSF53067
107 253 147 2.59E-35 –
ProSitePatterns
PS00329
113 126 14 –
IPR018181
Gene3D
G3DSA:3.30.420.40
117 146 30 1.30E-16 –
PRINTS
PR00301
119 129 11 8.50E-17
IPR013126
Gene3D
G3DSA:3.90.640.10
147 215 69 3.00E-25 –
Pfam
PF00012
213 477 265 5.30E-59
IPR013126
SUPERFAMILY
SSF100920
260 412 153 1.02E-46
IPR029047
Gene3D
G3DSA:2.60.34.10
265 398 134 1.90E-54
IPR029047
PRINTS
PR00301
342 358 17 8.50E-17
IPR013126
Coils
Coil
386 406 21 – –
Gene3D
G3DSA:1.20.1270.10
399 483 85 5.20E-19
IPR029048
SUPERFAMILY
SSF100934
409 483 75 8.83E-11
IPR029048

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

Genome browser

LORE1 insertions 4

Expression data

Expression pattern

Expression pattern of Lj0g3v0059079.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0059079.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.