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Lj0g3v0061799.1

Overview

Field Value
Gene ID Lj0g3v0061799
Transcript ID Lj0g3v0061799.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: beta-amylase 3, chloroplastic-like [Glycine max] gi|356511157|ref|XP_003524296.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR31352
1 395 395 4.80E-287 –
PANTHER
PTHR31352:SF1
1 395 395 4.80E-287 –
Gene3D
G3DSA:3.20.20.80
82 395 314 3.40E-169
IPR013781
SUPERFAMILY
SSF51445
84 394 311 5.31E-143
IPR017853
Pfam
PF01373
89 394 306 7.20E-134
IPR001554
PRINTS
PR00750
120 134 15 3.20E-51
IPR001554
PRINTS
PR00750
141 159 19 3.20E-51
IPR001554
PRINTS
PR00750
163 184 22 3.20E-51
IPR001554
ProSitePatterns
PS00506
167 175 9 –
IPR018238
PRINTS
PR00750
255 277 23 3.20E-51
IPR001554
PRINTS
PR00750
330 349 20 3.20E-51
IPR001554
PRINTS
PR00750
366 382 17 3.20E-51
IPR001554
PRINTS
PR00750
383 394 12 3.20E-51
IPR001554

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0000272
Biological process Polysaccharide catabolic process The chemical reactions and pathways resulting in the breakdown of a polysaccharide, a polymer of many (typically more than 10) monosaccharide residues linked glycosidically.
Subterm of
GO:0016161
Molecular function Beta-amylase activity Catalysis of the reaction: (1,4-alpha-D-glucosyl)(n+1) + H2O = (1,4-alpha-D-glucosyl)(n-1) + alpha-maltose. This reaction is the hydrolysis of 1,4-alpha-glucosidic linkages in polysaccharides so as to remove successive maltose units from the non-reducing ends of the chains.
Subterm of

Genome browser

LORE1 insertions 5

Expression data

Expression pattern

Expression pattern of Lj0g3v0061799.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0061799.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.