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| Field | Value |
|---|---|
| Gene ID | Lj0g3v0077169 |
| Transcript ID | Lj0g3v0077169.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: ubiquitin carboxyl-terminal hydrolase 17-like [Glycine max] gi|356497712|ref|XP_003517703.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 19 | 19 | – | – | |
| Phobius | 1 | 2 | 2 | – | – | |
| TMHMM | 2 | 21 | 20 | – | – | |
| Phobius | 3 | 14 | 12 | – | – | |
| Phobius | 15 | 19 | 5 | – | – | |
| Phobius | 20 | 616 | 597 | – | – | |
| SUPERFAMILY | 61 | 104 | 44 | 1.22E-09 | – | |
| ProSiteProfiles | 64 | 101 | 38 | 10.341 | ||
| Pfam | 64 | 101 | 38 | 1.20E-06 | ||
| MobiDBLite | 214 | 316 | 103 | – | – | |
| SUPERFAMILY | 397 | 609 | 213 | 2.55E-52 | – | |
| Pfam | 399 | 609 | 211 | 6.50E-20 | ||
| ProSiteProfiles | 399 | 616 | 218 | 29.918 | ||
| PANTHER | 400 | 609 | 210 | 1.70E-119 | – | |
| PANTHER | 400 | 609 | 210 | 1.70E-119 | – | |
| ProSitePatterns | 400 | 415 | 16 | – | ||
| Gene3D | 523 | 595 | 73 | 2.10E-09 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Ubiquitin-dependent protein catabolic process | The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin group, or multiple ubiquitin groups, to the protein. | ||
| Biological process | Protein deubiquitination | The removal of one or more ubiquitin groups from a protein. | ||
| Molecular function | Thiol-dependent ubiquitinyl hydrolase activity | Catalysis of the thiol-dependent hydrolysis of an ester, thioester, amide, peptide or isopeptide bond formed by the C-terminal glycine of ubiquitin. |
Expression pattern of Lj0g3v0077169.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj0g3v0077169.2, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.