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Lj0g3v0080309.1

Overview

Field	Value
Gene ID	Lj0g3v0080309
Transcript ID	Lj0g3v0080309.1
Lotus japonicus genome version	MG20 v3.0
Description	PREDICTED: ribonuclease H2 subunit C-like [Cicer arietinum] gi\|502150052\|ref\|XP_004507766.1\|
Working Lj name	n.a.

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
PANTHER	PTHR21726:SF42 View details on PTHR21726:SF42 Search for proteins/transripts with this domain View external data on PTHR21726:SF42	1	149	149	1.40E-48	–
PANTHER	PTHR21726 View details on PTHR21726 Search for proteins/transripts with this domain View external data on PTHR21726	1	149	149	1.40E-48	–
Pfam	PF08615 View details on PF08615 Search for proteins/transripts with this domain View external data on PF08615	22	133	112	2.10E-24	IPR013924 Show description in modal box View details on IPR013924 Search for proteins/transripts with this domain View on EBI InterPro Service
CDD	cd09271 View details on cd09271 Search for proteins/transripts with this domain View external data on cd09271	23	112	90	1.34E-35	IPR013924 Show description in modal box View details on IPR013924 Search for proteins/transripts with this domain View on EBI InterPro Service

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0006401 View details of GO:0006401 AmiGO InterPro QuickGO	Biological process	RNA catabolic process	The chemical reactions and pathways resulting in the breakdown of RNA, ribonucleic acid, one of the two main type of nucleic acid, consisting of a long, unbranched macromolecule formed from ribonucleotides joined in 3',5'-phosphodiester linkage.	Subterm of View details of GO:0016070 View details of GO:0034655 View details of GO:0044265
GO:0032299 View details of GO:0032299 AmiGO InterPro QuickGO	Cellular component	Ribonuclease H2 complex	A protein complex that possesses ribonuclease H activity, in which the catalytic subunit is a member of the RNase H2 (or HII) class. For example, in Saccharomyces the complex contains Rnh201p, Rnh202p and Rnh203p.	Subterm of View details of GO:0032991 View details of GO:0044424

Genome browser

LORE1 insertions 10

Expression data

Expression pattern

Expression pattern of Lj0g3v0080309.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0080309.1, powered by CORGI.

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