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GO:0006401

View this GO term in other databases

Overview

Field Value
Namespace Biological process
Short description RNA catabolic process
Full defintion The chemical reactions and pathways resulting in the breakdown of RNA, ribonucleic acid, one of the two main type of nucleic acid, consisting of a long, unbranched macromolecule formed from ribonucleotides joined in 3',5'-phosphodiester linkage.
Subterm of

Relationships

The relationship of GO:0006401 with other GO terms.

Relationship type GO terms
Is a
Regulates n.a.
Part of n.a.
Positively regulates n.a.
Negatively regulates n.a.

Ancestor tree

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Additional data

This table contains additional metadata associated with the GO entry's definition field.

Field Value
ISBN

· ISBN: 0198506732

, · pages

Associated Lotus transcripts 21

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Transcript Name Description GO terms GO count
Lj0g3v0080309.1
– PREDICTED: ribonuclease H2 subunit C-like [Cicer arietinum] gi|502150052|ref|XP_004507766.1|
GO terms
2
Lj0g3v0273479.1
– PREDICTED: exosome complex component RRP43-like [Glycine max] gi|356526509|ref|XP_003531860.1|
GO terms
3
Lj1g3v3329390.1
– PREDICTED: superkiller viralicidic activity 2-like 2-like [Glycine max] gi|356527455|ref|XP_003532326.1|
GO terms
3
Lj4g3v0987840.1
– PREDICTED: exosome complex component RRP43-like [Glycine max] gi|356526509|ref|XP_003531860.1|
GO terms
3
Lj6g3v0622070.1
– PREDICTED: helicase SKI2W-like [Glycine max] gi|356569566|ref|XP_003552970.1|
GO terms
3
LotjaGi1g1v0553600.2
– ATP-dependent RNA helicase family protein; TAIR: AT1G59760.1 RNA helicase, ATP-dependent, SK12/DOB1 protein; Swiss-Prot: sp|Q9XIF2|MTR4_ARATH DExH-box ATP-dependent RNA helicase DExH9; TrEMBL-Plants: tr|V7AZU7|V7AZU7_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0553600
GO terms
3
LotjaGi2g1v0462200.1
– Tetratricopeptide repeat-containing protein; TAIR: AT1G76630.2 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|F4I3Z5|SKI3_ARATH Tetratricopeptide repeat protein SKI3; TrEMBL-Plants: tr|K7K5N8|K7K5N8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0462200
GO terms
2
LotjaGi2g1v0462200.2
– Tetratricopeptide repeat-containing protein; TAIR: AT1G76630.2 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|F4I3Z5|SKI3_ARATH Tetratricopeptide repeat protein SKI3; TrEMBL-Plants: tr|K7K5N9|K7K5N9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0462200
GO terms
2
LotjaGi2g1v0462200.3
– Tetratricopeptide repeat-containing protein; TAIR: AT1G76630.2 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|F4I3Z5|SKI3_ARATH Tetratricopeptide repeat protein SKI3; TrEMBL-Plants: tr|K7K5N9|K7K5N9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0462200
GO terms
2
LotjaGi4g1v0121200.1
– Exosome complex component; TAIR: AT1G60080.1 3'-5'-exoribonuclease family protein; Swiss-Prot: sp|Q2KHU3|EXOS8_BOVIN Exosome complex component RRP43; TrEMBL-Plants: tr|A0A151QPU2|A0A151QPU2_CAJCA Exosome complex exonuclease RRP43; Found in the gene: LotjaGi4g1v0121200
GO terms
3
LotjaGi4g1v0121200.2
– Exosome complex component; TAIR: AT1G60080.1 3'-5'-exoribonuclease family protein; Swiss-Prot: sp|Q2KHU3|EXOS8_BOVIN Exosome complex component RRP43; TrEMBL-Plants: tr|A0A151QPU2|A0A151QPU2_CAJCA Exosome complex exonuclease RRP43; Found in the gene: LotjaGi4g1v0121200
GO terms
3
LotjaGi4g1v0121200.3
– Exosome complex component; TAIR: AT1G60080.1 3'-5'-exoribonuclease family protein; Swiss-Prot: sp|Q2KHU3|EXOS8_BOVIN Exosome complex component RRP43; TrEMBL-Plants: tr|A0A151QPU2|A0A151QPU2_CAJCA Exosome complex exonuclease RRP43; Found in the gene: LotjaGi4g1v0121200
GO terms
3
LotjaGi4g1v0290800.1
– Ribonuclease H2 subunit C; TAIR: AT2G39440.1 ribonuclease H2 subunit C-like protein; Swiss-Prot: sp|Q8TDP1|RNH2C_HUMAN Ribonuclease H2 subunit C; TrEMBL-Plants: tr|I3SJ55|I3SJ55_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0290800
GO terms
2
LotjaGi4g1v0439700.1
– ATP-dependent RNA helicase family protein; TAIR: AT2G06990.1 RNA helicase, ATP-dependent, SK12/DOB1 protein; Swiss-Prot: sp|Q9ZVW2|HEN2_ARATH DExH-box ATP-dependent RNA helicase DExH10; TrEMBL-Plants: tr|I1KPQ5|I1KPQ5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0439700
GO terms
3
LotjaGi4g1v0439700.2
– ATP-dependent RNA helicase family protein; TAIR: AT2G06990.1 RNA helicase, ATP-dependent, SK12/DOB1 protein; Swiss-Prot: sp|Q9ZVW2|HEN2_ARATH DExH-box ATP-dependent RNA helicase DExH10; TrEMBL-Plants: tr|I1KPQ5|I1KPQ5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0439700
GO terms
3
LotjaGi6g1v0013300.1
– Exosome complex component; TAIR: AT1G60080.1 3'-5'-exoribonuclease family protein; Swiss-Prot: sp|Q96B26|EXOS8_HUMAN Exosome complex component RRP43; TrEMBL-Plants: tr|I1KWF8|I1KWF8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0013300
GO terms
3
LotjaGi6g1v0013300.2
– Exosome complex component; TAIR: AT1G60080.1 3'-5'-exoribonuclease family protein; Swiss-Prot: sp|Q2KHU3|EXOS8_BOVIN Exosome complex component RRP43; TrEMBL-Plants: tr|A0A151QPU2|A0A151QPU2_CAJCA Exosome complex exonuclease RRP43; Found in the gene: LotjaGi6g1v0013300
GO terms
3
LotjaGi6g1v0013300.3
– Exosome complex component; TAIR: AT1G60080.1 3'-5'-exoribonuclease family protein; Swiss-Prot: sp|Q96B26|EXOS8_HUMAN Exosome complex component RRP43; TrEMBL-Plants: tr|I1MA04|I1MA04_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0013300
GO terms
3
LotjaGi6g1v0013300.4
– Exosome complex component; TAIR: AT1G60080.1 3'-5'-exoribonuclease family protein; Swiss-Prot: sp|Q96B26|EXOS8_HUMAN Exosome complex component RRP43; TrEMBL-Plants: tr|I1KWF8|I1KWF8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0013300
GO terms
3
LotjaGi6g1v0134200.1
– ATP-dependent RNA helicase family protein; TAIR: AT3G46960.2 RNA helicase, ATP-dependent, SK12/DOB1 protein; Swiss-Prot: sp|F4JAA5|SKI2_ARATH DExH-box ATP-dependent RNA helicase DExH11; TrEMBL-Plants: tr|I1N032|I1N032_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0134200
GO terms
3
LotjaGi6g1v0134200.2
– ATP-dependent RNA helicase family protein; TAIR: AT3G46960.1 RNA helicase, ATP-dependent, SK12/DOB1 protein; Swiss-Prot: sp|F4JAA5|SKI2_ARATH DExH-box ATP-dependent RNA helicase DExH11; TrEMBL-Plants: tr|I1N032|I1N032_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0134200
GO terms
3

Co-occuring GO terms 1

A list of co-occurring GO terms within the L. japonicus gene space:

GO term Namespace Name Observations Saturation (%)
GO:0006401
Biological process RNA catabolic process 1 4.76